Detailed information on CNT30226708


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555040Hordeum vulgareOryza glaberrima16.3727.199.09219forward
CNT30207585Hordeum vulgareHelianthus annuus25.4998.2791.5341forward
CNT30687569Hordeum vulgareTriticum urartu98.0664.599.921312forward

Expression of CNT30226708

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKGRFALDALYPPHYEGSVVLGSVEACFFSILFLVINTTTYS*

>peptide 2 (51 aa)
PKPSEYLFDRRLYLYGEFAAERSRPVSPSFPRRLPTKGSIQFLLQDTHARS*

>peptide 3 (72 aa)
MAKFLLKPSLPLNSAFGVNPAASMRKAAQRRLEGLLRKAARAAEGGKTKGVFWSPLRLGVLVGGVCHDETRE*

>peptide 4 (95 aa)
MAERRWQAVIWIRCFTRRRFSSSRKNCMGVVLGGTSRMTVPGNSTVLRAAMVVDPAEPTQRFRPDCRKWVIRFCISMRRNTAPTIPSSKSSAYRA*

>peptide 5 (55 aa)
RSLRSIFLIGASICMGNSLLKDPAQCPLPSPAAFRPKGVYNFFFRTLMPDRETAC*

>peptide 6 (57 aa)
MLFTLPTMRALLSWGALKLASFPYFSWSSIRRPILNRTDLIFTTRGISCFCRILPIS*

Sequence

>CNT30226708
CCCGAAGCCTTCGGAGTATCTTTTTGATAGGCGCCTCTATCTGTATGGGGAATTCGCTGCTGAAAGATCCCGCCCAGTGTCCCCTTCCTTCCCCCGCCGC
CTTCCGACCAAAGGGAGTATACAATTTCTTCTTCAGGACACTCATGCCCGATCGTGAGACTGCCTGTTGAACGCCTGATGGCACCTTGCTCTGACCTGAG
CTATGCAACAACGAGATCCCCCTCGATCTTTGCCGGATGTGCTTGACGGTCCCCCATAATACGCTAACTTGGGGACTTTTTAGTCCATCTTTTCCAAGAG
TCTCCGCTAGTTGAACCGCGTCCAGTAGACGACCTCTTCCGCTCATCCCCTTCGTCAGCTCTTTGATAGGGATACTATAACCTAGGTCCCTAAACTTGGA
ATGGATGGCGGAGCGTAGGTGGCAGGCAGTTATATGGATACGGTGCTTTACCCGTAGACGCTTCTCCAGCTCTCGCAAGAATTGTATGGGAGTCGTCCTC
GGGGGGACTTCCCGAATGACCGTACCGGGGAATTCTACCGTACTCCGTGCAGCTATGGTTGTTGATCCTGCGGAGCCTACCCAAAGGTTCAGGCCGGATT
GTAGGAAGTGGGTGATACGTTTTTGTATTTCTATGAGAAGAAATACGGCACCCACGATTCCCAGTAGTAAGTCGTCGGCATATCGCGCGTAACAAATCCT
TATTAATAAGGAATGGCTTTTAAAGGGGGCCAGCTTACGGGCCAGGCCTCTCTCTGACCTGATAACTAGTATCGCCTCCCCGCCCAGCTCTATCAGCAGG
CCCCTTCTTTTGCAATACTTAAGAAGGTCTCTCATGGCCAAATTCTTATTAAAGCCTTCTCTACCATTGAATTCGGCCTTCGGGGTCAACCCAGCGGCTT
CTATGAGGAAGGCGGCGCAAAGGAGGCTCGAGGGCTTGTTAAGGAAGGCGGCTAGGGCCGCTGAAGGGGGGAAAACGAAAGGCGTTTTCTGGTCTCCCCT
TCGCCTGGGGGTGCTTGTGGGGGGGGTGTGCCACGACGAAACAAGGGAATGAAAGGTCGCTTTGCGTTGGATGCTCTTTACCCTCCCCACTATGAGGGCT
CTGTTGTCTTGGGGAGCGTTGAAGCTTGCTTCTTTTCCATACTTTTCTTGGTCATCAATACGACGACCTATTCTTAATAGAACCGATCTTATTTTCACTA
CAAGAGGAATTTCGTGCTTCTGCCGGATCCTCCCTATCTCCTGATCGAGCTTGTGTAGGTAGATATTGCCTGGTAGGGCCGATAGTAGTACACTGTTTGG
GATGGAGTCAGGGCCCTTCTCACCCCCTACGAGTCGTC