Detailed information on CNT30226609


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180581Hordeum vulgareSecale cereale10053.2899.491186reverse complement
CNT30443885Hordeum vulgareAegilops tauschii97.8955.4799.661161forward

Expression of CNT30226609

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MCAEEASIIIRYLSNQKLLRLVGRTHANIILTLSRPIRVSESYFIQILSFPKLHKEKRVIGQQYCFHLF*

>peptide 2 (32 aa)
MVRALSTMCHLTGRAQDRVYLPYDIYEKRTLY*

>peptide 3 (45 aa)
VHIIIVIINHISRWHTCLLKSIYYGCGLGPSHPQTLNRILKTGLN*

>peptide 4 (58 aa)
MTFMKNERCIKGFLSVSNKAGSILEFRGQLREVCLHVCRRSVYHYTLFIQSKTSSFSW*

>peptide 5 (59 aa)
MIAKISISFITLVFLIGIGKQIQPLGHCHSTSLSEYPTKSGPVGAGCAKPFDLPAGGPP*

Sequence

>CNT30226609
GTCCATATCATAATTGTCATAATCAATCATATCAGTAGGTGGCATACTTGCCTGCTCAAGTCCATCTACTATGGATGTGGGCTTGGACCAAGCCATCCCC
AAACACTGAACCGGATCTTGAAAACGGGACTGAACTGAATCCGACTTCTTGGTAGCCCAGTGGCTTTTGGTCCCCATCGGAAAGTGCTGAATGGATTGCT
CCTTGCCCAACGACAAAAAGAAAGAAATTTAGGAGAGGATTGATAGGTTTAAGCATTCAGGGCTGGTCGCTCTTATGGATACCTGTGAGCTAGAGTCGGG
AATCGAAAAGGAGACAACGGAAGCCGTACAGATCTAGTTGGGAATGCTGTTCATGCAGTGGAGAGCGTAAATGACCGGCCCTTGAGGCGCGAGTAGACTT
ATCATATAGAAAGGAAAGAGATAAGCGGAGGGAGGATGGTTTGATGATAGCCAAGATCTCCATCTCATTTATCACTCTCGTATTCTTAATAGGAATCGGC
AAGCAGATACAACCACTAGGCCATTGCCATTCGACTAGTCTATCAGAGTATCCTACGAAGTCAGGTCCAGTAGGCGCAGGATGCGCTAAGCCATTCGATC
TTCCTGCTGGTGGTCCACCATAGAGCTCCTATGTAGCCGTTTGTTTTCTCGCTTAACTAATTTGTATGAGGCGATACAGCTGAGATCAGCCAATGGTTCG
AGCACTTAGCACAATGTGCCACTTAACCGGACGAGCGCAAGACCGGGTCTACCTACCTTATGACATTTATGAAAAACGAACGTTGTATTAAGGGGTTTCT
ATCAGTTAGTAACAAAGCCGGCAGTATCCTTGAATTCAGGGGTCAGCTACGGGAGGTATGTCTCCATGTGTGCCGAAGAAGCGTCTATCATTATACGCTA
TTTATCCAATCAAAAACTTCTTCGTTTAGTTGGTAGAACCCACGCCAATATCATATTGACTCTCTCTCGTCCAATAAGAGTTTCCGAGAGTTACTTTATT
CAAATTCTCTCCTTTCCAAAGCTCCACAAGGAAAAAAGAGTAATAGGACAACAATATTGCTTTCATTTATTTTGAGTTCTTTCTTTGTTGAGATGGAAAT
CGACGTTCTTTTGAAAAGGGCTAGGTAGTTTGCACGCAGGCAAAACTTCTTCATGAAAGGTAAAAAATAGACTTGGATTTCATGGG