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Detailed information on CNT30226503


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673990Hordeum vulgareSetaria viridis29.0642.4591.41163forward
CNT30183892Hordeum vulgareSecale cereale76.2980.9195.56428forward
CNT30307914Hordeum vulgareTriticum aestivum71.398.5296400forward
CNT30400060Hordeum vulgareTriticum turgidum76.1181.0295.78427forward
CNT30589124Hordeum vulgareMusa acuminata14.0825.9992.4179forward
CNT30442646Hordeum vulgareAegilops tauschii76.8336.5995.59431forward
CNT30254921Hordeum vulgareAvena sativa13.932.6489.7478forward
CNT30670281Hordeum vulgareTriticum dicoccoides62.3943.2195.71350forward
CNT30142107Hordeum vulgareLolium perenne31.1920.3782.29175forward
CNT309612Hordeum vulgareZea mays28.8817.2287.04162forward
CNT30344604Hordeum vulgareEragrostis tef28.1617.4686.08158forward
CNT30102287Hordeum vulgareOryza rufipogon17.2928.5391.7597forward
CNT30576846Hordeum vulgareOryza barthii16.0424.6692.2290forward
CNT30580567Hordeum vulgareEchinochloa crusgalli29.0621.8291.41163forward
CNT30497331Hordeum vulgareDigitaria exilis28.717.7586.96161forward

Expression of CNT30226503

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MKTMRSGSSISSQPGRLRSRAVDISGDDDVADVVVPRVREVRGQVLQRAGAGVRRLPVWERRPLLRLHPVAQPQRLRHAEHGPAAVVDLGLLEP

>peptide 2 (60 aa)
MTMSPMLLCHGSARCVARFSSGPVPGYVACPSGSAAHSCAFTQLPSPSASGTQSMAQRQW*

>peptide 3 (42 aa)
MHSQQRPLLKLYTLQRLPAGEPTLLYSSSTHGRCARRASVAR*

>peptide 4 (34 aa)
MDRLRNMNENHALRLLDLLSARSAPLKGRRYFWG*

Sequence

>CNT30226503
GTGATGACTTCTGTTTGGTGGGCCGCGTTGGGGATGTCCTAAGCTCAATGAAATGTTAAGGTGATCACGTGATAACTATCCGTACACATCATCATGCAAA
GAATTTATACAGATCACACGGATGCATTCGCAACAGCGGCCGCTACTTAAGCTTTACACATTACAAAGGTTGCCGGCCGGAGAGCCGACGTTGTTGTACA
GTTCCAGCACGCACGGACGGTGCGCGCGCAGAGCCAGCGTGGCAAGGTGATCAACCAATGGATCGACTCAGAAACATGAATGAAAACCATGCGCTCCGGC
TCCTCGATCTCCTCTCAGCCCGGTCGGCTCCGCTCAAGGGCCGTAGATATTTCTGGGGATGACGATGTCGCCGATGTTGTTGTGCCACGGGTCCGCGAGG
TGCGTGGCCAGGTTCTCCAGCGGGCCGGTGCCGGGGTACGTCGCCTGCCCGTCTGGGAGCGCCGCCCACTCCTGCGCCTTCACCCAGTTGCCCAGCCCCA
GCGCCTCCGGCACGCAGAGCATGGCCCAGCGGCAGTGGTAGATCTCGGACTCCTTGAACCG