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Detailed information on CNT30226487


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-127

BLAST vs NONCODE:
NONMEST001181, E-value = 9e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30398809Hordeum vulgareTriticum turgidum75.1635.2192.22463forward
CNT30723091Hordeum vulgareTriticum spelta83.7768.3492.44516forward
CNT30349330Hordeum vulgareEragrostis tef74.3529.5591.92458forward

Expression of CNT30226487

Peptides detected in this lncRNA

>peptide 1 (66 aa)
LVLDLRLDVVNGVRGLNLQCDGLAGEGLDKDLHATTEPEHQVEGGLLLDVVVRQGAAILELLASED*

>peptide 2 (53 aa)
MPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTKICIPPRSLSTRWRVDSFWML*

>peptide 3 (50 aa)
LSWIFALTLSMVSEDSTSSVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

>peptide 4 (44 aa)
MPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTNICICKYKAKQT*

Sequence

>CNT30226487
CCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCCAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT
GCCACCACGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATT
AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGC
CGGTGAGGGTCTTGACGAAGATCTGCATACCACCACGAAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCC
ATCCTCGAGCTGCTTGCCAGCGAAGATTAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCAGAG
GACTCGACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAATATCTGCATCTGTAAATACAAAGCAAAGCAGACATAACCAGAGTAAGTTATGG
TACAGGGATATGTGCA