Detailed information on CNT30226334


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONATHT001124, E-value = 1e-98

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671247Hordeum vulgareSetaria viridis83.3662.5897.011102forward
CNT30578173Hordeum vulgareOryza barthii100.3839.0997.591327forward

Expression of CNT30226334

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPANQFTMSLSLTLVKEATWIGLGLLRLMRP

>peptide 2 (36 aa)
MIEARTLSGQVPLIDHNDIVEMLHGPIYIETEKEEP*

>peptide 3 (59 aa)
MQLRGPLVGPDRWWYHTLLKGTVRETLASYGSVLESGPPFSFDQRVLEPMGVTNHSFID*

>peptide 4 (56 aa)
MKEKGLRIRKTKEAWRADYKTTTTIQAMSDSEAFSLFFFESPTTSYLIADKASLLN*

>peptide 5 (44 aa)
RLHKQSPPARSPILEIRLATLLITAERAMNPQRQTNKGRGIFGE*

Sequence

>CNT30226334
AGATTGCACAAACAAAGCCCTCCTGCCCGCAGCCCTATTCTAGAAATTAGGCTGGCTACGTTACTTATAACCGCAGAACGAGCAATGAATCCCCAACGAC
AAACGAACAAGGGGCGGGGCATTTTCGGGGAGTAGCCCCCTTCAGAAGAAACTTCCTGGCACATACATTAAGGGAGCCATCGAAAGGTGACTGAAACACC
TGAAACGGGGACTACTCGAGCTAATGATAGAGGCAAGAACACTTTCCGGCCAAGTCCCATTAATTGATCATAACGATATCGTGGAAATGCTGCACGGACC
CATATATATAGAAACAGAAAAAGAAGAACCTTGATACTAAACCAGATCGAACAAGGGATCTTCTTGGAAATGGGAAGATCTAGGATAGGCAGCCAACCTC
CTGGAAAGAGCGATGTGCATAGACCGGGTGAGTAGGGATGCAGCTCCGTGGACCGCTCGTCGGGCCTGATAGGTGGTGGTATCACACCCTTCTCAAAGGA
ACCGTACGTGAGACTCTCGCCTCATACGGCTCCGTCCTGGAATCTGGACCCCCCTTTTCCTTTGACCAACGGGTCCTCGAACCCATGGGGGTTACGAATC
ATTCATTCATTGATTGATTCAAGGTAGCTTTAGCCATTGTGGGTAGAAGCTAGTCGCCAGAAGCGAAGCAGTGATCTTCCGGGCCGGAAAGGTTCTATTT
TTCTGACGCGTAAGCTACCGCAAAATGAATGAAGGAAAAAGGCCTCAGGATTAGAAAGACTAAAGAGGCATGGAGGGCCGACTACAAGACTACGACTACA
ATACAAGCCATGAGCGATAGCGAAGCCTTCAGCCTTTTTTTTTTTGAAAGCCCCACAACTAGCTATCTTATAGCAGATAAGGCAAGCCTACTCAACTAAT
CTCATGTAAACGCCTGTTCGCTAAAATCCAAATAGAAAAAGACAACTACTTATTAAACATGTAGTTGAGTGCTCCGTCGTTGTTCGGATCTTGACCGAGT
CCGAGCTTCCCAAGCTCTATGCTGTTTGGGAACTCAGCAAGGGTCTTACCACCTTCTTGATTGACTATATTTGAGTCTTTGGGGTACTTTAGGATTATAT
TCCGCGCCGAAGATTTGTGCTTGTGGGCTAGGGTGAATATAGCGGACCAGCGGATCTGGTAGTTGACAATCGTTCGGACTTGGTAAAGGTTGTCGCAGCA
CCTGTAGTAGGACAGAGGACTTATTGCGATGCCCGCGAACCAATTTACTATGTCTCTGTCGCTGACGTTGGTCAAAGAGGCCACGTGGATTGGCCTGGGT
CTTCTTCGGCTAATGAGACCTC