Detailed information on CNT302263


BLAST search results

BLAST vs Swiss-Prot:
sp|P12365|CATA2_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692136Zea maysOryza sativa32.3229.4991.14361forward
CNT30678563Zea maysSetaria viridis12.1864.7692.65136forward
CNT30519927Zea maysSetaria italica31.3320.485.43350forward
CNT30640148Zea maysNymphaea colorata23.3711.8286.21261forward
CNT30281430Zea maysChenopodium quinoa14.7721.6879.39165forward
CNT30185311Zea maysSecale cereale24.819.6984.84277forward
CNT30298786Zea maysTriticum aestivum22.3895.4294250forward
CNT30223811Zea maysHordeum vulgare16.4785.9895.11184forward
CNT30552704Zea maysOryza glaberrima12.4447.9386.33139forward
CNT30243876Zea maysAvena sativa18.7127.7685.65209forward
CNT30663726Zea maysTriticum dicoccoides29.6340.0292.45331forward
CNT30228927Zea maysAnanas comosus11.7355.2790.08131forward
CNT30347744Zea maysEragrostis tef34.7424.7887.11388forward
CNT30369978Zea maysOryza glumipatula32.3248.0791.41361forward
CNT3038340Zea maysCucumis melo10.6529.984.87119forward
CNT30575497Zea maysOryza barthii33.8430.1491.01378forward
CNT30116279Zea maysOryza nivara29.1916.4287.12326forward

Expression of CNT302263

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MASVRSLVAWLWLAPPTATASSSISERTPQVGRQWNLT*

>peptide 2 (56 aa)
MGPRAPTVRELSLFHTGAPELVVQYGALKALDGRCCTSMHAYMNSRPIHRQRRNTN*

>peptide 3 (47 aa)
MRPGQKASCSFSAKKLSMLRLSTRRPTGCSGNASSRRSSISGSMVWM*

>peptide 4 (68 aa)
MPTSSKRKENMCRLSGWCEKKSRMRQLSWMCVRGLGLSACTMSGNLMPSRMKKTGKLLPTRSQLPSRV*

>peptide 5 (56 aa)
LLSAAGDVGGRDRVPRRVPDGVVPGGEVVDLLVAVHEVHGSVVVVVVVCALGRVGR*

Sequence

>CNT302263
CTTCTCTCGGCGGCCGGCGATGTGGGCGGTCGGGATCGGGTACCTCGGCGCGTTCCTGACGGCGTCGTACCTGGAGGGGAAGTAGTCGACCTCCTCGTGG
CGGTGCATGAAGTTCATGGATCCGTCGTAGTGGTTGTTGTGGTGTGCGCACTTGGGCGCGTTGGCCGGTAGCAGCAGGTAGTTGGGGCCGAGGCGGTGGC
GCTGCGTGTCGGAGTAGGAGAAGATCCTGGTCTGCAGCAGCTTGTCGTCGGAGTAGTAGATACCAGGGACGATGAGGCCCGGGCAGAAGGCCAGCTGCTC
GTTCTCCGCGAAGAAGTTGTCGATGTTGCGGTTGAGCACCAGGCGGCCCACGGGCTGCAGCGGGAACGCGTCGTCGAGGCGGTCTTCCATCTCGGGGTCC
ATGGTCTGGATGTAGAGCGTCCACTCGGGGAAGTTCCCCGCCGCGATGGCGTCCGTGAGGTCCTTGGTGGCGTGGCTGTGGTTGGCGCCGCCAACGGCGA
CGGCCTCGTCGTCCATCAGCGAGCGCACGCCGCAGGTGGGGCGCCAGTGGAACTTGACGTAGGTGACGGTGCCGGCGCGGCTGACGAGCGTGTACGTGTG
CACCCCGGATCCGTCCATGTGGCGGTAGTCGGCGGGGATGCCGACGTCGTCGAAGAGGAAGGAGAACATGTGCAGGCTCTCCGGGTGGTGCGAGAAGAAG
TCGAGGATGCGCCAGTTGTCCTGGATGTGCGTCCGCGGGTTGGGCTTGAGCGCGTGCACCATGTCCGGGAACTTGATGCCGTCGCGGATGAAGAAGACGG
GGAAGTTGTTGCCCACCAGGTCCCAGTTGCCCTCCCGGGTGTAGAACTTGACGGCGAACCCGCGCGGGTCGCGCAGCGTCTCGGGGCTCCCGCGCTCGTG
GATCACCGTGGTAGTCCTCCAGCAGGATGGGACCTCGTGCGCCGACGGTGAGGGAGCTGTCGTTGTTCCACACGGGGGCGCCGGAGTTGGTGGTCCAGTA
CGGGGCGTTGAAGGCGCTCGACGGGCGGTGCTGCACAAGCATGCATGCATATATGAACAGCCGTCCGATCCATCGTCAACGACGAAACACGAATTGAGAC
AGCAAACAAGAACGGCG