Detailed information on CNT30226250


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONATHT001124, E-value = 1e-98

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269710Hordeum vulgareChenopodium quinoa15.0147.1494.44198forward
CNT30162048Hordeum vulgarePistacia vera18.0486.2393.28238reverse complement
CNT3094424Hordeum vulgareSolanum tuberosum8.1940.693.52108reverse complement
CNT30592653Hordeum vulgareMusa acuminata21.6111.8992.28285forward
CNT30627905Hordeum vulgareDaucus carota32.6817.1693.97431forward
CNT30680520Hordeum vulgareTriticum urartu73.7733.6299.38973forward
CNT30104358Hordeum vulgareOryza rufipogon4.7823.1610063reverse complement

Expression of CNT30226250

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MQLRGPLVGPDRWWYHTLLKGTVRETLASYGSVLESGPPFSFDQRVLEPMGVTNHSFID*

>peptide 2 (44 aa)
RLHKQSPPARSPILEIRLATLLITAERAMNPQRQTNKGRGIFGE*

>peptide 3 (56 aa)
MKEKGLRIRKTKEAWRADYKTTTTIQAMSDSEAFSLFFFESPTTSYLIADKASLLN*

>peptide 4 (29 aa)
MPANQFTMSLSLTLVKEATWIGLGLLRLMR

>peptide 5 (36 aa)
MIEARTLSGQVPLIDHNDIVEMLHGPIYIETEKEEP*

Sequence

>CNT30226250
AGATTGCACAAACAAAGCCCTCCTGCCCGCAGCCCTATTCTAGAAATTAGGCTGGCTACGTTACTTATAACCGCAGAACGAGCAATGAATCCCCAACGAC
AAACGAACAAGGGGCGGGGCATTTTCGGGGAGTAGCCCCCTTCAGAAGAAACTTCCTGGCACATACATTAAGGGAGCCATCGAAAGGTGACTGAAACACC
TGAAACGGGGACTACTCGAGCTAATGATAGAGGCAAGAACACTTTCCGGCCAAGTCCCATTAATTGATCATAACGATATCGTGGAAATGCTGCACGGACC
CATATATATAGAAACAGAAAAAGAAGAACCTTGATACTAAACCAGATCGAACAAGGGATCTTCTTGGAAATGGGAAGATCTAGGATAGGCAGCCAACCTC
CTGGAAAGAGCGATGTGCATAGACCGGGTGAGTAGGGATGCAGCTCCGTGGACCGCTCGTCGGGCCTGATAGGTGGTGGTATCACACCCTTCTCAAAGGA
ACCGTACGTGAGACTCTCGCCTCATACGGCTCCGTCCTGGAATCTGGACCCCCCTTTTCCTTTGACCAACGGGTCCTCGAACCCATGGGGGTTACGAATC
ATTCATTCATTGATTGATTCAAGGTAGCTTTAGCCATTGTGGGTAGAAGCTAGTCGCCAGAAGCGAAGCAGCGATCTTCCGGGCCGGAAAGGTTCTATTT
TTCTGACGCGTAAGCTACCGCAAAATGAATGAAGGAAAAAGGCCTCAGGATTAGAAAGACTAAAGAGGCATGGAGGGCCGACTACAAGACTACGACTACA
ATACAAGCCATGAGCGATAGCGAAGCCTTCAGCCTTTTTTTTTTTGAAAGCCCCACAACTAGCTATCTTATAGCAGATAAGGCAAGCCTACTCAACTAAT
CTCATGTAAACGCCTGTTCGCTAAAATCCAAATAGAAAAAGACAACTACTTATTAAACATGTAGTTGAGTGCTCCGTCGTTGTTCGGATCTTGACCGAGT
CCGAGCTTCCCAAGCTCTATGCTGTTTGGGAACTCAGCAAGGGTCTTACCACCTTCTTGATTGACTATATTTGAGTCTTTGGGGTACTTTAGGATTATAT
TCCGCGCCGAAGATTTGTGCTTGTGGGCTAGGGTGAATATAGCGGACCAGCGGATCTGGTAGTTGACAATCGTTCGGACTTGGTAAAGGTTGTCGCAGCA
CCTGTAGTAGGACAGAGGACTTATTGCGATGCCCGCGAACCAATTTACTATGTCTCTGTCGCTGACGTTGGTCAAAGAGGCCACGTGGATTGGCCTGGGT
CTTCTTCGGCTAATGAGAC