« Back to Hordeum vulgare search


Detailed information on CNT30226090


BLAST search results

BLAST vs Swiss-Prot:
sp|P12862|ATPAM_WHEAT, E-value = 2e-120

BLAST vs NONCODE:
NONORUT004354, E-value = 2e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618998Hordeum vulgareSesamum indicum42.6626.3688.37430forward
CNT30200883Hordeum vulgarePisum sativum45.6331.791.52460forward
CNT30434820Hordeum vulgareAegilops tauschii36.5110099.18368forward
CNT30212621Hordeum vulgareHelianthus annuus54.1731.2791.39546forward
CNT30571978Hordeum vulgareVitis vinifera54.3711.8992.88548forward
CNT30103343Hordeum vulgareOryza rufipogon39.7853.7597.76401forward

Expression of CNT30226090

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPESQHQGLTQIERRRPLRDIVPIPVLNYRRLVS*

>peptide 2 (33 aa)
MARKSICNNYLKKVKNSLLGFSWREKPSSYICE*

>peptide 3 (32 aa)
MWTTNFIHIITICKACHIFKKMSCGLKIIRYR*

Sequence

>CNT30226090
CCATAATTTTCTAATATTGGGTTATGTGGACCACTAATTTTATACATATTATCACAATTTGCAAGGCTTGTCACATATTCAAGAAAATGAGCTGTGGATT
GAAAATCATCAGGTATAGGTAATCATCAGGTATAGGTATAGGTAGGGGGTCCGTCAACCCTTGTGGGGCTGGGTGGGGTATCCTGAACTACTGGAGCAGC
TCCCCCTTGTGGCTGGGGTAGACTCTCAGCAGCTTGGTTTACGCATGGCACGAAAATCTATCTGTAATAATTATTTGAAAAAAGTCAAAAATAGCCTATT
GGGGTTCAGTTGGCGAGAAAAGCCTTCTTCCTACATCTGCGAGTAAGGGGCAACCTTTTTGATTAATTCACAGGTAAGGCAAAGTGCTTTCTTTTAAAGA
AGCATCTGGTTCCATCTTTCTTTCGTTAGTTAAGCCACCTTTTTCTAAGAAGGATTTTTGTAATTCTGGATTAATAGTACTTAGAATGGCTTTTTCATAT
TGAGAAATTCTGTCTAGTGGCATTCGATCACAGAAGCCGTTGACAGCAGCATAAATCACAACAATTTGTTTTTCAATTGGAAGTGGTTCATATTGTGGTT
GTTTGGGCACTTCTGTAAGCCTTGCACCTCTATTGAGTAATGCCTGAGTCGCAGCATCAAGGTCTGACCCAAATTGAGCGAAGGCGGCCACTTCGCGATA
TTGTGCCAATTCCAGTTTTGAACTACCGCAGACTTGTTTCATAGCTTTCAACTGAGCGGCAGACCCGACACGACTGACGGATAAGCCAACGTTAATAGCT
GGTCTAATTCCGTGATAAAAGAGCTCTGTTTCCAAACAGATTTGTCCATCTGTAATGGAGATCACATTGGTGGGGATATAGGCCGATACGTCTCCAGCTT
GTGTTTCAATCACGGGTAACGCAGTCGAAGGAATTGTATGTGACGGGCATATACAAAAGCCTCAAAGGACATCAAACCCTTTGTGATGTGCTCAAAAAGC
AGATGTTG