Detailed information on CNT30226003


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 2e-35

BLAST vs NONCODE:
NONBNAT005965, E-value = 2e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190495Hordeum vulgareSecale cereale101.8883.7589.15433forward
CNT30395877Hordeum vulgareTriticum turgidum48.4744.2195.63206forward
CNT30240626Hordeum vulgareAvena sativa56.9441.7290.91242forward
CNT30140877Hordeum vulgareLolium perenne43.5335.1797.84185forward

Expression of CNT30226003

Peptides detected in this lncRNA

>peptide 1 (40 aa)
NDLQTNSNTGTKDTITHDIKGSLIHHVSSSELQTTYIISL*

>peptide 2 (62 aa)
MSRHLLATTQAEHQVEGGLLLDVVVSQGAAILELLASEDEALLVRRDALLVLDLRLDVVNGVR

Sequence

>CNT30226003
CAACGATCTGCAGACAAATAGTAACACTGGCACGAAAGATACAATAACACACGATATTAAGGGTTCACTTATTCATCACGTTTCATCATCCGAACTTCAA
ACCACATACATCATAAGTTTGTAAACACAAACAAACATAAAAGAGATAGAAACACGACCAGAGCACATGCTCAAAACTCCATTGGAGTACACCGTCGACA
CCAGACCTGTGAACCCAGAGACAGAAGCAGCGCCATGAGCAGGCACTTACTGGCCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGAT
GTTGTAGTCAGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCC
TTGACGTTGTCAATGGTGTCAGAGG