Detailed information on CNT30226002


BLAST search results

BLAST vs Swiss-Prot:
sp|P14717|PAL1_ORYSJ, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189069Hordeum vulgareSecale cereale41.5528.4784.55123forward
CNT30576230Hordeum vulgareOryza barthii39.5343.9884.62117forward

Expression of CNT30226002

Peptides detected in this lncRNA

>peptide 1 (97 aa)
ALLAEARAGEVAGRVHGQHLLRHLRHAVLHGGLDVLLKVAEAERVHVLVVLLRTLDMCLATVDVNDWVVVDGVDLALDGLGGRPDDLDLGAEPLRRRA

>peptide 2 (97 aa)
LFSLKRALERSPVGFMVSTFFDTCVTQFFTEVLMFSSRWRRPREFTSWLCCSALWTCALPRWTSMTGLSLTELTSRSMDLVADRMTSIWGPSHCGDVR

Sequence

>CNT30226002
GGCTCTTCTCGCTGAAGCGCGCGCTGGAGAGGTCGCCGGTAGGGTTCATGGTCAGCACCTTCTTCGACACCTGCGTCACGCAGTTCTTCACGGAGGTCTT
GATGTTCTCCTCAAGGTGGCGGAGGCCGAGAGAGTTCACGTCCTGGTTGTGCTGCTCCGCACTCTGGACATGTGCCTTGCCACGGTGGACGTCAATGACT
GGGTTGTCGTTGACGGAGTTGACCTCGCGCTCGATGGACTTGGTGGCAGACCGGATGACCTCGATCTGGGGGCCGAGCCACTGCGGCGACGTGCGG