Detailed information on CNT30225948


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 5e-108

BLAST vs NONCODE:
NONMTRT001605, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30579967Hordeum vulgareEchinochloa crusgalli72.4643.3886.65442forward

Expression of CNT30225948

Peptides detected in this lncRNA

>peptide 1 (88 aa)
KMVRRMQGATWKWTNQTIILHKTLVIYIMVVQLRPQENTPHGEHSPKTPYLPGTKLVAKAHALLLTGSAMWSARLSSGPFPVTIAWTK*

>peptide 2 (38 aa)
MPQGLQPGQEGRSCHLGRVGRRSHRVGRLQCGTPRRHP*

>peptide 3 (32 aa)
MEVDKSNHYFAQNSRNLHHGSTTQTTRKHASW*

>peptide 4 (32 aa)
MARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 5 (31 aa)
MRYPSTAPMSTTWHAQIARILCAWTRLGLPR*

Sequence

>CNT30225948
ATAAAATGGTCAGACGGATGCAAGGCGCGACATGGAAGTGGACAAATCAAACCATTATTTTGCACAAAACTCTCGTAATTTACATCATGGTAGTACAACT
CAGACCACAAGAAAACACGCCTCATGGTGAGCACAGTCCCAAGACACCTTACTTGCCGGGGACAAAGTTGGTGGCGAAGGCCCATGCATTGTTGTTGACG
GGGTCGGCGATGTGGTCAGCGAGGTTGTCGAGTGGGCCCTTTCCAGTGACGATAGCTTGGACAAAGTAGCCAAACATTGAGAACATGGCGAGGCGACCAT
TCTTGATCTCCTTCACCTTGAGCTCGGCGAATGCCTCAGGGTCTTCAGCCAGGCCAAGAGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCGACGATCTC
ACCGAGTGGGCCGCCTGCAATGCGGTACCCCTCGACGGCACCCATGAGCACCACCTGGCATGCCCAAATAGCTAGGATACTTTGTGCGTGGACGAGGCTT
GGGTTGCCAAGGTAGTCGAGACCACCCTCACTAAAGATCTGGGAGCCAGCCTTGAACCAAACGGCCTCTCCAAACTTGACGCCGTTGCGGGCGAGCAACT
CAGGGAAGAC