Detailed information on CNT30225926


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 6e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712585Hordeum vulgareGlycine max7.6622.2290.3852forward
CNT30190473Hordeum vulgareSecale cereale26.2223.5896.07178forward
CNT30569510Hordeum vulgareActinidia chinensis8.9829.3391.861forward
CNT30592144Hordeum vulgareMusa acuminata16.945092.17115forward
CNT30553402Hordeum vulgareOryza glaberrima17.3822.5690.68118forward
CNT30254684Hordeum vulgareAvena sativa10.63297.2272forward
CNT30139319Hordeum vulgareLolium perenne25.4814.7995.38173forward
CNT30596194Hordeum vulgareOryza meridionalis16.9426.4490.43115forward
CNT30370054Hordeum vulgareOryza glumipatula17.3822.5690.68118forward
CNT30116534Hordeum vulgareOryza nivara17.3827.3190.68118forward
CNT30113851Hordeum vulgareFicus carica14.7336.189100forward

Expression of CNT30225926

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPPKAHAMPRMPTPLQAASVVLTVGSDWCLYP

>peptide 2 (31 aa)
MPDHLKRKFTLKTYVDVSKLIALVVEIEYMI*

Sequence

>CNT30225926
GTTCCTTATTTCCTTAACCAATCACCGGTCCCCTGATTTTTAGGGATGGGCCTGTATTGTTTTTATCTTTCAACTAACTCATGCCAGATCATCTTAAACG
TAAGTTTACGTTAAAAACTTACGTAGATGTATCAAAGCTCATAGCACTGGTAGTAGAAATTGAGTATATGATTTGATAATCGCTTTTTAGTTTTTACCAA
CTATTAACTTCAGTAATTCGAGTTTAACTTACTAGAATATTCTTTCTGAGCACACTTGTTAGAATGTTTTCTCGTTCTTAAGTAAGTTGTTCCAATACTA
AGTCAACGACTTCCGCAGCACTTTGATCTGCAGCCAATTCTATCATTGGCCATAAACCCATATACTCTAAAGTGTACTTTTCTTTTGATGGACACTGTAA
AGTGTCTCTATGGTTTAATGGTATATATACTGCTACGCTATAGTAGCCATGAGCGATGCAACTAGCGAGACGTTTCAGTAGCCAGTCTCAGTAGTAGTAC
TAGTACTCACCGGGATGTGGGAATCACGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGACCGTGTAGACGAGCACGAAGATCATGCCGCCGAAGGCCCA
TGCTATGCCGAGGATGCCGACGCCGCTGCAGGCCGCGTCGGTGGTGTTGACGGTGGGGTCGGACTGGTGCTTGTACCCG