Detailed information on CNT30225892


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 5e-82

BLAST vs NONCODE:
NONMTRT002042, E-value = 5e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690921Hordeum vulgareOryza sativa66.6725.2393.6406forward
CNT30190515Hordeum vulgareSecale cereale96.2269.9389.76586forward
CNT30304099Hordeum vulgareTriticum aestivum96.7274.2794.23589forward
CNT30395844Hordeum vulgareTriticum turgidum94.4237.1794.61575forward

Expression of CNT30225892

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MGTRWSIKPDTVDLTLTRHTTNSSRTVSVITDHHGGGAPGGG*

>peptide 2 (49 aa)
IFRGNARVNSKMNKHIGSNSLIHTKPYHQLFPRNQQTSWGLDGPSNQIQ*

>peptide 3 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSSVMVLPVRVLTKICMPPRRRRTR*

Sequence

>CNT30225892
TATCTTCCGTGGCAACGCACGAGTCAACAGTAAAATGAACAAGCATATTGGTTCAAATTCACTTATTCATACCAAACCATACCATCAACTGTTTCCACGA
AACCAACAAACATCATGGGGACTCGATGGTCCATCAAACCAGATACAGTAGACTTAACACTAACAAGACATACGACTAATAGCAGCAGGACCGTCAGTGT
AATTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCATCCTCCAGCTGCTTGCCAG
CAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGATGATTCCACCTCAAGTGTGAT
GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCTCCTCGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGG
GTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTG
TGTCAGACG