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Detailed information on CNT30225888


BLAST search results

BLAST vs Swiss-Prot:
sp|P85087|GLNA_VITSX, E-value = 6e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691310Hordeum vulgareOryza sativa23.1740.8291.67120forward
CNT30671311Hordeum vulgareSetaria viridis19.3135.2194100forward
CNT30302575Hordeum vulgareTriticum aestivum21.6230.688.39112forward
CNT30552642Hordeum vulgareOryza glaberrima23.1718.7591.67120forward
CNT30170Hordeum vulgareZea mays14.6727.2486.8476forward
CNT30364720Hordeum vulgareSorghum bicolor23.1718.9392.5120forward
CNT30369697Hordeum vulgareOryza glumipatula23.1719.6491.67120forward
CNT30115740Hordeum vulgareOryza nivara23.1731.5891.67120forward

Expression of CNT30225888

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MITRDHSIQTARENNQPNTVVILCFDTPLATHHPPPTQRREREERPDTLMR*

>peptide 2 (76 aa)
MQPNVKGKCWKNFRPRHESSNGHHRTPSPTVHHTAIGASGLPQDGVDVGRLVLAGQTALVALAVGRDVLLVLQLELL

>peptide 3 (38 aa)
MLEEFSPKARILQWPPPDPITDGPSHGDRSFRASTGWC*

>peptide 4 (43 aa)
MATTGPHHRRSITRRSELQGFHRMVLMSAVSCLPVRRRSLPSP*

Sequence

>CNT30225888
GAGCACTAATAACATCCGTCCATCCGTAGCATGAGACAAGCGGCGTGGTACCACGGCTGCGGTACGGACCATTTTATTACCATATCAATCGATGATTACA
CGAGACCATAGCATCCAGACGGCAAGGGAAAACAATCAACCAAATACTGTAGTAATCTTGTGCTTTGACACGCCCCTTGCCACCCATCACCCACCACCCA
CCCAAAGACGAGAACGAGAAGAGAGACCAGACACCCTGATGAGATGACCATGATGATGTGACCTACCTAAGCGGACTAGGAGTAGTATGCAACCAAACGT
AAAAGGAAAATGCTGGAAGAATTTTCGCCCAAGGCACGAATCCTCCAATGGCCACCACCGGACCCCATCACCGACGGTCCATCACACGGCGATCGGAGCT
TCAGGGCTTCCACAGGATGGTGTTGATGTCGGCCGTCTCGTGCTTGCCGGTCAGACGGCGCTCGTTGCCCTCGCCGTAGGCCGCGATGTGCTCCTTGTGC
TTCAGCTTGAGCTTCTCG