Detailed information on CNT30225885


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 5e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30286106Hordeum vulgareTriticum aestivum32.4235.185.85106forward
CNT30254575Hordeum vulgareAvena sativa44.9513.890.48147forward
CNT30364646Hordeum vulgareSorghum bicolor28.758.5690.4394forward
CNT30573527Hordeum vulgareVitis vinifera23.555.0487.0177forward
CNT30105534Hordeum vulgareOryza longistaminata14.3720.5293.6247forward
CNT3024809Hordeum vulgarePopulus trichocarpa25.998.2384.7185forward
CNT30329128Hordeum vulgareDioscorea rotundata24.163.1186.0879forward

Expression of CNT30225885

Peptides detected in this lncRNA

>peptide 1 (86 aa)
ACRSPRTRARPPPPWAAPPGCSARTPPPWRRWRSIAWHRATRNVEDMIFRMSIASAVFLDEIRPSEFTSWLCCSALWTWLEGRPLL*

>peptide 2 (60 aa)
GVPFSTDARAASTSLGSAARMFCSNSATLAKMEVNRLAQGDQERGRHDLQDVNSLGSLPG*

>peptide 3 (46 aa)
RAVLHGRARGLHLLGQRRPDVLLELRHLGEDGGQSPGTGRPGTWKT*

>peptide 4 (43 aa)
MRSDQVSSHPGCAAPRSGHGWKAGHCCRSRSRAPRTGRTSACQ*

>peptide 5 (30 aa)
MVGRQAIVVEVVHELRELGEHQLANSSNGEA

Sequence

>CNT30225885
GGCGTGCCGTTCTCCACGGACGCGCGCGCGGCCTCCACCTCCTTGGGCAGCGCCGCCCGGATGTTCTGCTCGAACTCCGCCACCTTGGCGAAGATGGAGG
TCAATCGCCTGGCACAGGGCGACCAGGAACGTGGAAGACATGATCTTCAGGATGTCAATAGCCTCGGCAGTCTTCCTGGATGAGATCAGACCAAGTGAGT
TCACATCCTGGTTGTGCTGCTCCGCGCTCTGGACATGGTTGGAAGGCAGGCCATTGTTGTAGAAGTCGTTCACGAGCTCCGAGAACTGGGCGAACATCAG
CTTGCCAATAGCAGCAATGGCGAGGCG