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Detailed information on CNT30225777


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 2e-89

BLAST vs NONCODE:
NONMTRT002042, E-value = 7e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191038Hordeum vulgareSecale cereale58.1148.3794.88430forward
CNT30303464Hordeum vulgareTriticum aestivum73.9264.0592.14547forward
CNT30397375Hordeum vulgareTriticum turgidum73.9231.4492.14547forward
CNT30667831Hordeum vulgareTriticum dicoccoides73.9271.4192.14547forward

Expression of CNT30225777

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MKPDTVELDTNETDTSHEQQGPPTRVPRAITDHLGGGAPDEGWTPSGCCNQQEYGHPPAACQQR*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (71 aa)
MSNRGHPPEYPGQSLTTSEAEHQMKGGLLLDVVISKSTAILQLLASKDEALLVRGDALLVLDLGLDVVDGV*

Sequence

>CNT30225777
GGCAACCACAAAAGCCGCAAAAGAATAAAACTAGTTAGAGGCAACCAATTCAACCGGAAGATATCAATTTCAACAGTAAAATGAGCATAGGCAGATTAGT
TCAAAGTTCACTTATTCATACTTGACCGTACTGCTATACCAGCAACTGTTTAAACGAAACCAACACACATCGCACTGGGACTCGATGATCCATGACTGTT
TAAACGAAACCAACACATCTCACTGGGACTCGATGATCCATGAAACATGAAACCAGACACTGTAGAACTTGACACAAACGAGACTGACACTTCACATGAG
CAACAGGGGCCACCCACCAGAGTACCCAGGGCAATCACTGACCACCTCGGAGGCGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGC
AAGAGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG
ATGGTGTCTGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATGCCTCCACGGAGGCGCAGGACAAGGTGGAGGG
TGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTT
GTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAC