Detailed information on CNT30225767


BLAST search results

BLAST vs Swiss-Prot:
sp|P38478|YMF40_MARPO, E-value = 3e-19

BLAST vs NONCODE:
NONATHT003664, E-value = 3e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098190Hordeum vulgareSolanum tuberosum16.8323.5591.8122forward
CNT30431658Hordeum vulgarePapaver somniferum59.1727.0389.74429forward

Expression of CNT30225767

Peptides detected in this lncRNA

>peptide 1 (74 aa)
ILFSLQEEFRASAGSSLSPDRACVGRYCLVGPIVVHCLGWSQGPSHPLRVVRRKTFSEWGKRTWNRRSLPSRLR*

>peptide 2 (66 aa)
MSVDGVKTLPDVEFQKPARGSPLFFDPSEGRVAASTRAEVRCVWKLGIVNGFGYHSDRLFHDLFYG*

>peptide 3 (64 aa)
MDSGTILIASFMIFSMGRTTVSGLNFDPSFFLHLKKGEQSLFFAPSIDRSGPLLPARTKGSLRK*

>peptide 4 (38 aa)
MSNSKNQREVPHSSLIRLRAEWQPRPERKCDVSGNSGS*

Sequence

>CNT30225767
GATCTTATTTTCACTACAAGAGGAATTTCGTGCTTCTGCCGGATCCTCCCTATCTCCTGATCGAGCTTGTGTAGGTAGATATTGCCTGGTAGGGCCGATA
GTAGTACACTGTTTGGGATGGAGTCAGGGCCCTTCTCACCCCCTACGAGTCGTCCGGCGGAAAACTTTTTCTGAGTGGGGTAAAAGAACTTGGAATCGTC
GATCTCTTCCTTCAAGATTGAGATGAATCGATGTCGGTCGATGGTGTGAAAACACTTCCTGATGTCGAATTCCAAAAACCAGCGAGAGGTTCCCCACTCT
TCTTTGATCCGTCTGAGGGCCGAGTGGCAGCCTCGACCCGAGCGGAAGTGCGATGTGTCTGGAAACTCGGGATCGTAAATGGATTCGGGTACCATTCTGA
TCGCCTCTTTCATGATCTTTTCTATGGGTAGAACTACTGTGAGCGGTCTAAACTTCGACCCTTCTTTCTTTCTTCATTTAAAAAAGGGGGAGCAAAGCCT
GTTTTTTGCTCCCTCAATTGATAGATCAGGGCCCCTCCTGCCGGCCCGAACGAAAGGCTCTTTAAGGAAGTAGTCCCATCACTCTCGGGCCCGGCACCAA
CCAAGAGGAGGCGGGGCTCTCTCCAATCATTCCGAAGAGCCGAGATCTCGTAAAGGAAAAATTAGCTAGCTCAGCAGGTTTGGACCCGGGTGAATCAGTT
CAGTGAAGGAAGGGAGCCTAAACTT