CANTATAdb - search

Detailed information on CNT30225735

BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 4e-171

BLAST vs NONCODE:
NONBNAT007398, E-value = 7e-53

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30253100	Hordeum vulgare	Avena sativa	89.91	87.73	88.78	722	forward
CNT30139746	Hordeum vulgare	Lolium perenne	89.54	76.82	88.04	719	forward
CNT30369277	Hordeum vulgare	Oryza glumipatula	72.48	59.69	85.22	582	forward
CNT30497363	Hordeum vulgare	Digitaria exilis	82.32	56.16	85.63	661	forward
CNT30604592	Hordeum vulgare	Oryza punctata	78.08	62.89	85.65	627	forward

Expression of CNT30225735

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 2 (29 aa)
MAHRQWITSSSRFLAKVSGSAESPAVSHP*

>peptide 3 (38 aa)
MPQGLQPGQEGRSCHLGRVGRRSHRVGRLQCGTPRRHP*

>peptide 4 (65 aa)
LVIYIMVVQLRPQENTPHGEHSPKTPYLPGTKLVAKAHALLLTGSAMWSARLSSGPFPVTIAWTK*

>peptide 5 (31 aa)
MRYPSTAPMSTTWHAQIARILCAWTRLGLPR*

Sequence

>CNT30225735
CTCGTAATTTACATCATGGTAGTACAACTCAGACCACAAGAAAACACGCCTCATGGTGAGCACAGTCCCAAGACACCTTACTTGCCGGGGACAAAGTTGG
TGGCGAAGGCCCATGCATTGTTGTTGACGGGGTCGGCGATGTGGTCAGCGAGGTTGTCGAGTGGGCCCTTTCCAGTGACGATAGCTTGGACAAAGTAGCC
AAACATTGAGAACATGGCGAGGCGACCATTCTTGATCTCCTTCACCTTGAGCTCGGCGAATGCCTCAGGGTCTTCAGCCAGGCCAAGAGGGTCGAAGCTG
CCACCTGGGTAGAGTGGGTCGACGATCTCACCGAGTGGGCCGCCTGCAATGCGGTACCCCTCGACGGCACCCATGAGCACCACCTGGCATGCCCAAATAG
CTAGGATACTTTGTGCGTGGACGAGGCTTGGGTTGCCAAGGTAGTCGAGACCACCTTCACTAAAGATCTGGGAGCCGGCCTTGAACCAAACAGCCTCACC
GAACTTGACGCCGTTGCGGGCGAGCAACTCAGGGAAGACACAACCAAGTGCCCCGAGCATGGCCCATCGGCAATGGATCACCTCCAGCTCCCGGTTCTTG
GCGAAAGTCTCAGGGTCAGCTGAAAGTCCGGCAGTGTCCCACCCATAGTCGCCAGGGAACTCACCGGTGAGGTAGCTCGGGGGCTCACCGGAGAGTGGGC
CGAGGTAGAGCACACGGTCGGCACCGTACCATGGGCTGCCAGAGGAAACCTGTTTCGCCTTTGCTGCAGTCTTGCGCATGGTGACACGGGCCTCACCGAA
GAG