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Detailed information on CNT3022569


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000677, E-value = 5e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Populus trichocarpaNymphaea colorata33.133.3379.09287forward
CNT30377107Populus trichocarpaArabidopsis thaliana21.4539.3284.41186forward
CNT30380803Populus trichocarpaManihot esculenta21.4539.6681.18186forward
CNT30405510Populus trichocarpaBeta vulgaris24.2244.6882.38210forward
CNT30526368Populus trichocarpaPhaseolus vulgaris32.317.5981.79280forward
CNT30168584Populus trichocarpaPistacia vera7.6124.3586.3666forward
CNT30298786Populus trichocarpaTriticum aestivum6.4621.3787.556forward
CNT30563752Populus trichocarpaActinidia chinensis22.3839.8486.6194forward
CNT30654455Populus trichocarpaRosa chinensis32.6461.9383.04283forward
CNT30687547Populus trichocarpaTriticum urartu6.8125.9988.1459forward
CNT30368538Populus trichocarpaSorghum bicolor24.835.8378.6215forward
CNT30154060Populus trichocarpaPrunus persica36.9131.8786.25320forward
CNT30574555Populus trichocarpaVitis vinifera36.137.8581.79313forward
CNT30704838Populus trichocarpaPrunus avium19.6132.6387.06170forward

Expression of CNT3022569

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MCKLSGWWEKKSRILQACTMSGNFIPSRMKKTGKLFPTRSKLP*

>peptide 2 (39 aa)
MVGEEVKNPPGMHHVWEFHSITDEEDREIVSHEIKVTLN*

>peptide 3 (61 aa)
MTVICASYFNCLILQQTFHTTSRFPMKFHIMGFSSLVDQHVGVNTRAFHMSIILWNTQIIK*

>peptide 4 (30 aa)
MDVIYLLNLSTSSSVPHTFAFLHHITLTEIK

Sequence

>CNT3022569
TCAGGATCAATTGTCTGGATGAAAAGTTTCCACTCAGGATAGGTGCCAGCTGCAATGGAGTCATATAGATCCTGAGTAGCATGACTGTGATTTGTGCCTC
CTACTTTAACTGCCTCATCCTCCAACAAACATTTCACACCACAAGTAGGTTTCCAATGAAATTTCACATAATGGGCTTTTCCAGCCTTGTTGATCAACAT
GTAGGTGTTAACACCAGAGCCTTCCATATGTCTATAATCTTGTGGAACACCCAAATCATCAAATAGGAAGGAGAACATGTGCAAACTTTCAGGATGGTGG
GAGAAGAAGTCAAGAATCCTCCAGGCATGCACCATGTCTGGGAATTTCATTCCATCACGGATGAAGAAGACAGGGAAATTGTTTCCCACGAGATCAAAGT
TACCCTGAATTAACAAGTCAAGGAAGGGCATAGAGAATAAGAAAATTGGAACCTTGAAAAGCTAAAGCAATAAACTTCATACAATCAACTAGAATTAATT
ATTCCTATGTAAAGGAATAATGCACAAAAACAAAGCTTCACGGATGTAAAAGGTTATGCCTTGTTGTTTGAGTATAGAAAAACAACAACATTCATGCTGG
TGAATTGAGACACACAAATAGGAAAAAGAATTAAGTTCTCTCTTTTCTCAAGTCTTATTCATGCCAGTCAAACCTTCATCAAAACAAGCAGATAAAGATT
TTGCAAACAATACATTTATGAACATCTAAAACTTTGTGGGATAATCATATTAAACTTTAATTCATCGATCCCTATGGATGTGATATATCTGCTGAATCTG
TCTACATCATCATCGGTGCCTCACACATTTGCTTTCCTCCACCATATCACACTAACAGAAATAAAAC