Detailed information on CNT30225573


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 5e-173

BLAST vs NONCODE:
NONBNAT007398, E-value = 5e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534338Hordeum vulgareEucalyptus grandis38.855.0183.55620forward
CNT30139374Hordeum vulgareLolium perenne50.1391.3386.77801forward
CNT30722304Hordeum vulgareTriticum spelta24.3499.2392.03389forward

Expression of CNT30225573

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MVTRASPKRAKDGTFLTALPAKVEEERDMVAAAIGKLRKVSAVWVLEWALARDDSLDKEAKH*

>peptide 2 (31 aa)
MRYPSTAPMSTTWHAQIARILCAWTRLGLPR*

>peptide 3 (31 aa)
MRYPSTAPMSTTWHAQIARMLCAWTRLGLPR*

>peptide 4 (32 aa)
MARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 5 (32 aa)
MARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 6 (29 aa)
MAHRQWITSSSRFLAKVSGSAESPAVSHP*

>peptide 7 (68 aa)
MDEAWVAKVVKTTFTKDLGASLEPNSLTEVDAIAGEQLREDTTKCPEHSPAAMDHLQLPVLGEGLRVS*

>peptide 8 (88 aa)
KMVRRMQGATWKWTNQTIILHKTLVIYIMVVQLRPQENTPHGEHSPKTPYLPGTKLVAKAHALLLTGSAMWSARLSSGPFPVTIAWTK*

>peptide 9 (38 aa)
MPQGLQPGQEGRSCHLGRVGRRSHRVGRLQCGTPRRHP*

>peptide 10 (32 aa)
MEVDKSNHYFAQNSRNLHHGSTTQTTRKHASW*

>peptide 11 (38 aa)
MPRGLQPGQEGRSCRPGRVGRRSHRVGRRQCGTPRRHP*

Sequence

>CNT30225573
ATAAAATGGTCAGACGGATGCAAGGCGCGACATGGAAGTGGACAAATCAAACCATTATTTTGCACAAAACTCTCGTAATTTACATCATGGTAGTACAACT
CAGACCACAAGAAAACACGCCTCATGGTGAGCACAGTCCCAAGACACCTTACTTGCCGGGGACAAAGTTGGTGGCGAAGGCCCATGCATTGTTGTTGACG
GGGTCGGCGATGTGGTCAGCGAGGTTGTCGAGTGGGCCCTTTCCAGTGACGATAGCTTGGACAAAGTAGCCAAACATTGAGAACATGGCGAGGCGACCAT
TCTTGATCTCCTTCACCTTGAGCTCGGCGAATGCCTCAGGGTCTTCAGCCAGGCCAAGAGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCGACGATCTC
ACCGAGTGGGCCGCCTGCAATGCGGTACCCCTCGACGGCACCCATGAGCACCACCTGGCATGCCCAAATAGCTAGGATACTTTGTGCGTGGACGAGGCTT
GGGTTGCCAAGGTAGTCGAGACCACCTTCACTAAAGATCTGGGAGCCGGCCTTGAACCAAACAGCCTCACCGAACTTGACGCCGTTGCGGGCGAGCAACT
CAGGGAAGACACAACCAAGTGCCCCGAGCATGGCCCATCGGCAATGGATCACCTCCAGCTCCCGGTTCTTGGCGAAAGTCTCAGGGTCAGCTGAAAGTCC
GGCAGTGTCCCACCCATAGTCGCCAGGGAACTCACCGGTGAGGTAGCTCGGGGGCTCACCGGAGAGTGGGCCAAGGTAGAGCACACGGTCAGCACCGTAC
CATGGGCTGCCGGAGGAAACCTGCTTCGCCTTTGCTGCGGTCTTGCGCATGGTGACTCGGGCCTCCCCAAAGAGAGCCAAAGATGGTACGTTCTTGACCG
CCTTGCCGGCAAAGGTCGAGGAGGAGAGGGACATGGTGGCTGCCGCCATTGGAAAGCTAAGAAAAGTGTCCGCTGTATGGGTTCTCGAGTGGGCCCTTGC
CCGTGACGATAGCTTGGACAAAGAAGCCAAACATTGAGAACATGGCGAGGCGACCGTTCTTGATCTCCTTCACCTTAAGCTCGGCGAATGCCTCGGGGTC
TTCAGCCAGGCCAAGAGGGTCGAAGCTGCCGCCCGGGTAGAGTGGGTCGACGATCTCACCGAGTGGGCCGCCGGCAATGCGGTACCCCTCGACGGCACCC
ATGAGCACCACCTGGCATGCCCAGATAGCTAGGATGCTTTGCGCATGGACGAGGCTTGGGTTGCCAAGGTAGTCAAGACCACCTTCACTAAAGATTTGGG
AGCCAGCCTTGAACCAAACAGCCTCACCGAAGTTGACGCCATTGCGGGCGAGCAACTCAGGGAAGACACAACCAAGTGCCCCGAGCATAGCCCAGCGGCA
ATGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCAGGGTCAGCTGAAAGTCCGGCAGTGTCCCAACCATAGTCGCCAGGGAACTCGCCAGTGAGG
TAGCTCGGGGGCTCACCAGAGAGTGGGCCGAGGTAGAGCACACGGTCGGCACCGTACCATGGGCTGCCAGAGGAAACCTGTTTCGCCTTTGCTGCAGT