Detailed information on CNT30225509


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712450Hordeum vulgareGlycine max54.1596.4887.96274forward
CNT30562726Hordeum vulgareActinidia chinensis47.2360.287.87239forward
CNT30466470Hordeum vulgareSaccharum spontaneum67.9876.2796.22344reverse complement
CNT30646978Hordeum vulgareRosa chinensis62.06100.3290.76314forward

Expression of CNT30225509

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MPRAEVRVPSAAALKYVTNAILPGKARTTFNKRVPVPETDTGG*

>peptide 2 (46 aa)
PRFPSQGSSTEGESGPKIRPKGVVDEQQVNIPVLPLVGTEGRRTLG*

>peptide 3 (36 aa)
MPYSQEKLERPSTKGYLYPKPTQVGRQETTWRTETS*

Sequence

>CNT30225509
CCAAGGTTTCCTTCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGAACAACAGGTCAATATTCCTGTAC
TACCCCTTGTTGGTACGGAGGGACGGAGGACGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACAAGGTGGCCCTGCTTTTCCAGGGTAATAAG
GGGTAGAGAAAATGCCTCGAGCCGAGGTCCGAGTACCAAGCGCTGCAGCGCTGAAGTATGTAACCAATGCCATACTCCCAGGAAAAGCTCGAACGACCTT
CAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGCAAGAGACAACTTGGCGAACTGAAACATCTTAGTATCCAGAGGAAAAGAAAGCAGA
AGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGCGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCG
GTTGAG