CANTATAdb - search

Detailed information on CNT30225386

BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 2e-126

BLAST vs NONCODE:
NONSTUT001352, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30149365	Hordeum vulgare	Brachypodium distachyon	88.01	92.73	83.3	587	forward

Expression of CNT30225386

Peptides detected in this lncRNA

>peptide 1 (36 aa)
EAATWVEWVDDLTEWAACNAVPLDGAHEHDLTCPNS*

>peptide 2 (29 aa)
MAHRQWITSSSRFLAKVSGSAESPAVSHP*

>peptide 3 (59 aa)
MVTRASPKRAKDGTFLTALPAKVEEERDMVAAAIGKLRKVSAVWVLKEMSECGDDLREEG

Sequence

>CNT30225386
TCGAAGCTGCCACCTGGGTAGAGTGGGTCGATGATCTCACCGAGTGGGCCGCCTGCAATGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGACATG
CCCAAATAGCTAGGATGCTTTGGGCGTGGACAAGGCTTGGGTTGCCAAGGTAGTCGAGACCACCCTCACTAAAGATCTGGGAGCCGGCCTTGAACCAAAC
AGCCTCACCGAACTTGACGCCGTTGCGGGCGAGCAACTCAGGAAAGACACAACCAAGTGCCCCGAGCATGGCCCATCGGCAATGGATCACCTCCAGCTCC
CGGTTCTTGGCAAAGGTCTCAGGGTCAGCTGAAAGTCCGGCAGTGTCCCACCCATAGTCGCCTGGGAACTCACCGGTGAGGTAGCTCGGGGGCTCACCGG
AGAGTGGGCCAAGGTAGAGCACACGGTCAGCACCGTACCATGGGCTGCCGGAGGAAACCTGCTTCGCCTTTGCTGCGGTCTTGCGCATGGTGACTCGGGC
CTCCCCAAAGAGAGCCAAAGATGGTACGTTCTTGACCGCCTTGCCGGCAAAGGTCGAGGAGGAGAGGGACATGGTGGCTGCCGCCATTGGAAAGCTAAGA
AAAGTGTCCGCTGTATGGGTTCTCAAGGAGATGAGTGAGTGTGGAGATGATTTGAGAGAAGAGGGGG