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Detailed information on CNT3022534


BLAST search results

BLAST vs Swiss-Prot:
sp|P62981|RS27A_SOLTU, E-value = 3e-43

BLAST vs NONCODE:
NONPOPT001132, E-value = 1e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30276117Populus trichocarpaChenopodium quinoa53.2523.3788.37172forward
CNT30563764Populus trichocarpaActinidia chinensis21.364.0486.9669reverse complement
CNT30427845Populus trichocarpaPapaver somniferum39.6312.9286.72128forward
CNT30175006Populus trichocarpaVigna angularis32.220.1688.46104forward
CNT3050381Populus trichocarpaCucumis sativus40.5641.7283.97131forward

Expression of CNT3022534

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MISHEGSSTALSIRALLPQSLDFAAIINLVELKDSKLDLLLLVLDLLGLGVGLLLSLLGTTPQPKNQVES

Sequence

>CNT3022534
ATACTTTAAAAAAAACAAAGAAGCTAAAGAACCATTCGAGTAAGCTTAATCACCACCAGCCTTCTGGTAAACATAGGTAAGCCCACACTTACCACAGTAG
TGCCTATCAAAATGATTAGCCATGAAGGTTCCAGCACCGCACTCAGCATTAGGGCACTCCTTCCTCAATCTCTGGACTTTGCCGCTATCATCAACCTTGT
AGAACTGAAGGACAGCAAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTTCTCTTCTTGGCACCACCCCTCAA
CCGAAGAACCAAGTGGAGAGTGG