Detailed information on CNT30225308


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Hordeum vulgareOryza sativa67.4896.587.05193forward
CNT30708714Hordeum vulgareGlycine max22.0314.1387.363forward
CNT30396950Hordeum vulgareTriticum turgidum67.4882.4896.37193forward
CNT30680513Hordeum vulgareTriticum urartu51.0556.5991.1146forward
CNT30595700Hordeum vulgareOryza meridionalis67.8390.6587.11194forward
CNT30583094Hordeum vulgareEchinochloa crusgalli16.7823.8891.6748forward
CNT30116026Hordeum vulgareOryza nivara67.4836.6987.05193forward

Expression of CNT30225308

Peptides detected in this lncRNA

>peptide 1 (74 aa)
LSVGDELEEEAGGGRTEQLGHPVEDPGEDGDVAAGDVGGDCDTDEEGEGVGDRDRHKASRVEGAVLERVHTLTD*

>peptide 2 (43 aa)
MVMWPPEMLAAIATPTKRAKAWAIAIATRPAGSRAPSSRGFTL*

Sequence

>CNT30225308
CCTTTCCGTGGGTGACGAACTTGAGGAGGAAGCAGGCGGCGGCAGAACCGAGCAGCTGGGCCACCCAGTAGAAGATCCCGGTGAGGATGGTGATGTGGCC
GCCGGAGATGTTGGCGGCGATTGCGACACCGACGAAGAGGGCGAAGGCGTGGGCGATCGCGATCGCCACAAGGCCAGCCGGGTCGAGGGCGCCGTCCTCG
AGAGGGTTCACACTTTGACGGACTAACCATAGGCAATGGCGGACCCAACGCCGGCGAACACGAAGAGGAGGGTGGCGATGAACTCC