Detailed information on CNT30225247


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406993Hordeum vulgareBeta vulgaris19.7121.1995.1282forward
CNT30294119Hordeum vulgareTriticum aestivum63.9497.4495.11266forward

Expression of CNT30225247

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLSAVILSALGYQAFTVGTITGTPDVRPSRSFGTRERSSQCSNSHTGYGPNCLTTF*

>peptide 2 (44 aa)
RCCLSCDTGGSREVGGESTHLGVGLLLICFQQLSSPHLATKRLP*

>peptide 3 (85 aa)
MFVLPDPLVRGKGPLNALTPTPDMDQTVSRRSEPSSRTTLMGEQPNPWNHLQLQIVTPFVRVGTYPTRNFATLGPLYLRPPFPGAS

>peptide 4 (69 aa)
VAVSAVIPEALGKSEERALILGWAYYLYAFSSYPLRTWLPSVYRRHDNWYTRCSSFPILWYEGKVLSML*

Sequence

>CNT30225247
CGTTGCTGTCTCAGCTGTGATACCGGAGGCTCTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTGGGCTTACTACTTATATGCTTTCAGCAGTTAT
CCTCTCCGCACTTGGCTACCAAGCGTTTACCGTAGGCACGATAACTGGTACACCAGATGTTCGTCCTTCCCGATCCTTTGGTACGAGGGAAAGGTCCTCT
CAATGCTCTAACTCCCACACCGGATATGGACCAAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACATTAATGGGCGAACAACCCAACCCTTGG
AACCACCTACAGCTCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCATTATACTTACGGCCGCCGT
TCCCCGGGGCTTCGGT