Detailed information on CNT30225212


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30396065Hordeum vulgareTriticum turgidum26.5216.3691.43105forward
CNT30555755Hordeum vulgareOryza glaberrima20.26.9488.7580forward
CNT30251799Hordeum vulgareAvena sativa21.9714.5288.5187forward
CNT30578553Hordeum vulgareOryza barthii20.214.1688.7580forward

Expression of CNT30225212

Peptides detected in this lncRNA

>peptide 1 (38 aa)
RLQTFFSLLVHTFSKKTNQKSGSSSTIGWPKSKSQMPI*

>peptide 2 (35 aa)
MPSFPWQFPLYIVNNRLPNLFLRALKNKGKSSRLY*

>peptide 3 (56 aa)
ACKHFFPFLSIHSQRKPIKNLVAVVLLVGPSPSLRCLYSFIHTKCLLFLGNFLCTS*

Sequence

>CNT30225212
GCGCCTGCAAACATTTTTTTCCCTTCTTGTCCATACATTCTCAAAGAAAACCAATCAAAAATCTGGTAGCAGTAGTACTATTGGTTGGCCCAAGTCCAAG
TCTCAGATGCCTATATAGTTTTATACATACAAAATGCCTTCTTTTCCTTGGCAATTTCCTCTGTACATCGTAAATAATAGATTACCAAACTTGTTCCTGA
GAGCCTTGAAAAACAAAGGAAAATCATCCCGGCTGTATTAGTGGTGGATGGCTGCTGCTGCCTGCTGTGGGTAACTGACGCTCTTGAGCAAGGAGAGGTA
GTAAGGCACGTTGCGCGCTCCGGCGACATGGCCGCGGTCGAAGTCCTCCCACATGCGCACGTCCACGTACCCGTACTGCTCCGACACCAGCAGTGC