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Detailed information on CNT3022500


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 5e-79

BLAST vs NONCODE:
NONPOPT000587, E-value = 2e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376698Populus trichocarpaArabidopsis thaliana41.4941.8783.09278forward
CNT30266655Populus trichocarpaChenopodium quinoa47.1628.1186.71316forward
CNT30495282Populus trichocarpaOlea europaea43.7316.6485.32293forward
CNT3090332Populus trichocarpaSolanum tuberosum46.4247.8584.57311forward
CNT3066706Populus trichocarpaLeersia perrieri19.438.2490.77130forward
CNT30597062Populus trichocarpaOryza meridionalis44.0326.8283.73295forward
CNT30101810Populus trichocarpaOryza rufipogon46.1212.1984.14309forward
CNT30116702Populus trichocarpaOryza nivara36.4223.7681.97244forward

Expression of CNT3022500

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MALVTSTNLLWALGKVTVDTLGNIRALLLNVNQYFALVSIKTNVVRNKSNVTACVTNNLFIVYLSLGGDLSKDHDHVCLCTCLASNLAVWVLLK

>peptide 2 (35 aa)
TMRTTNNKTARWVEVKDSFLIKVLLRDNRLDDILL*

>peptide 3 (31 aa)
MLTNTLHLSASRPTSSETNPMLRHVSRTIFS*

>peptide 4 (33 aa)
MLSRDENSVDTNRDHCTIVIEVLNSNLSLAIRS*

Sequence

>CNT3022500
TCACCATGAGGACCACCAATAACAAAACGGCCAGATGGGTTGAGGTGAAAGATAGTTTTCTCATCAAGGTACTTCTCCGGGATAACAGGCTTGATGACAT
ACTCCTTTAGATCAGCGGCAATTTCATCATTTGTGACAGTCTCATCATGCTGAGTAGAGATGAGAACAGTGTGGACACGAACAGGGACCATTGCACCATT
GTCATTGAAGTACTCAACAGTAACTTGAGTCTTGCCATCAGGTCTTAACCAAGGGCAGGTTCCATTCTTCCTAACCTCGGTGAGGCGAGCACCAAGCTTG
GTGGCAAGAACATGGCTCAAAGGCATATACTCGGGGGTCTCATCAGTGGCATATACTCGGGGGTCTCATCAGTGGCATAACCAAACATATGGCCCTGGTC
ACCAGCACCAATCTCCTCTGGGCGCTTGGTAAAGTGACCGTGGACACCCTGGGCAATATCCGGGCTCTGTTGCTCAATGTTAACCAATACTTTGCACTTG
TCAGCATCAAGACCAACGTCGTCAGAAACAAATCCAATGTTACGGCATGTGTCACGAACAATCTTTTCATAGTCTATCTTTCCCTTGGTGGTGATCTCTC
CAAAGACCATGACCATGTTTGTCTTTGTACATGTCTCGCAAGCAACCTTGCTGTCTGGGTCCTGCTCAAG