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Detailed information on CNT3022498


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Populus trichocarpaOryza sativa31.6330.1984.97173forward
CNT30559885Populus trichocarpaActinidia chinensis40.7742.5687223forward
CNT30586804Populus trichocarpaMusa acuminata31.8122.5486.21174forward
CNT30370171Populus trichocarpaOryza glumipatula31.6320.484.97173forward
CNT30119164Populus trichocarpaCitrus clementina38.3945.0687.62210forward
CNT30116105Populus trichocarpaOryza nivara23.2217.2185.83127forward

Expression of CNT3022498

Peptides detected in this lncRNA

>peptide 1 (36 aa)
KHLHWWLSRPCSCAVNSQLNEQSPAPRRFQEIIPER*

>peptide 2 (60 aa)
MLLSASVNSISSIPSPVYQCKKALRRNMAVNCSLTLLNISWIDVEFPTKVDAIVRPFGAIS

Sequence

>CNT3022498
AAGCATCTGCACTGGTGGCTTTCACGTCCATGCTCATGTGCAGTAAATTCACAACTAAATGAACAATCCCCTGCCCCCAGGCGCTTCCAGGAAATAATTC
CCGAGCGCTAAGGGAATACAATACAATTGCGGTCCCTTTGCGAAGAGGCACCGACAGATATGAAATTCCTTATTCAAGTGCTTGATAGAAAAGAAGTAAC
GAAATGACCCTGTGGAAGAGAGAATTTCAAGACAACAAAAGAATATAGTATTAGATACCCAGCAAGGTTGGCATCATAGTTCTCTTCACCTTCCTCCTCA
TATTCACCATCTTCCTCAATTGTTGCATCCTGGTATTGCTGGTACTCTGCCACGAGATCGTTCATGTTGCTCTCTGCTTCAGTGAACTCCATCTCATCCA
TCCCTTCCCCAGTATACCAGTGCAAGAAGGCCTTGCGACGGAACATGGCTGTGAACTGCTCACTCACCCTCCTGAACATCTCCTGGATTGACGTGGAGTT
CCCCACAAAAGTCGATGCCATCGTCAGACCTTTTGGTGCAATATCAC