Detailed information on CNT30224976


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 1e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186769Hordeum vulgareSecale cereale70.5474.995.96570forward
CNT30300848Hordeum vulgareTriticum aestivum67.0886.3194.1542forward
CNT30393324Hordeum vulgareTriticum turgidum70.9254.4296.51573forward
CNT30258024Hordeum vulgareAvena sativa36.1473.1893.15292forward
CNT30664831Hordeum vulgareTriticum dicoccoides62.2580.195.63503forward
CNT30684612Hordeum vulgareTriticum urartu65.7254.5296.42531forward
CNT30721860Hordeum vulgareTriticum spelta54.2176.3196.12438forward

Expression of CNT30224976

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MLSNPMMRTYASGVLLLDLLHLVEHLCGVGASEHRQLPHCPVPAIVVPRRCVVLTEDEPNLAELEARHPLGADQVVDLLKEGLRAEWWPTRPSRWGP*

>peptide 2 (79 aa)
MRTCIYIATDSIHIQACFLEPCWYMNMDIHIFLGTNKKDKWRRKTQSNVRVDKTAMALYMWPIVSELFMPCRTPRSLVA*

>peptide 3 (60 aa)
MSELTKLQWHFICGPSSVSCLCLAGLLAAWWLEGDEADALHLTHVVESDDADIRVRGTPS*

Sequence

>CNT30224976
GTTCCTAATAAAAAGTATAAGCACGGTGCTGGAGATATTTTCCATTGGTTACCATTAAAACGTATATAGTTGACATATTATTGTATAATATTATGCGTAC
GTGCATATACATAGCCACCGACAGCATTCACATACAAGCATGTTTTCTCGAGCCATGTTGGTACATGAACATGGACATACACATATTCTTAGGAACAAAT
AAGAAAGATAAATGGAGAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACTGCAATGGCACTTTATATGTGGCCCATCGTCAGTGAGCTGTTTATGC
CTTGCCGGACTCCTCGCAGCCTGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGACGCATGTTGTCGAATCCGATGATGCGGACATACGCGTCA
GGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGTGTGGCGTCGGTGCATCCGAACATAGGCAGCTTCCACATTGTCCAGTACCGGCCATCG
TAGTACCCAGGAGATGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGAGCGGATCAGGTAGTCGACCTGCT
TAAGGAGGGCCTCCGTGCTGAGTGGTGGCCGACGAGGCCATCACGGTGGGGGCCATAGCTGTACTATGTAGGTATATAGCTTGCTAGAGGGAGGCACACT
GGCTTGAGGACTGGTTCGTTGGGTCAGCAAGGCTTATATAACCCTTGGGCCCTTCCTGAACAAGATGTGGAAGGAGTGGCTGCCGTTCGGCAGCGGCGAT
AAGCCCCC