Detailed information on CNT30224824


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071898Hordeum vulgareQuercus suber16.1523.8683.1589forward
CNT3068273Hordeum vulgareLeersia perrieri38.8428.3186.92214forward
CNT30107840Hordeum vulgareOryza longistaminata38.8446.9387.38214forward
CNT30104659Hordeum vulgareOryza rufipogon38.8444.2188.32214forward
CNT30578572Hordeum vulgareOryza barthii38.8445.7388.79214forward
CNT30582636Hordeum vulgareEchinochloa crusgalli29.9533.9586.06165forward
CNT30496955Hordeum vulgareDigitaria exilis28.4934.8987.9157forward
CNT30118011Hordeum vulgareOryza nivara27.438.1386.75151forward
CNT30593120Hordeum vulgareEragrostis curvula25.4149.4788.57140forward
CNT30604793Hordeum vulgareOryza punctata37.9345.1487.56209forward

Expression of CNT30224824

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MNNQSFTSAKPPVVIWKTSSPSGRLGASKILQTRCSPLPFLSINRMVAACANTWPPAGFLGSVMN

>peptide 2 (35 aa)
ARIKRRRISFFKEYKAERLHFHILQFDVSLKPRTC*

>peptide 3 (29 aa)
QESRDGVFHSSKNIRQSDFIFISFSLMSP*

Sequence

>CNT30224824
GCAAGAATCAAGAGACGGCGTATTTCATTCTTCAAAGAATATAAGGCAGAGCGACTTCATTTTCATATCCTTCAGTTTGATGTCTCCCTGAAGCCAAGAA
CATGTTAATCTTACATCTACACTTACATAAGGCTAAGGTCTCATGATGAGCCATGCGAGATAACTCTTGTCCTCAGTACAAATCCTTAAGGTATTAGTAC
AAGCTTACAGAATACCCAACAGAACTATCAACAGTTTAAGACAGGATAGAGGTTGCCCAGTTTCTTCTCTGCAGTGGCAAGAACAAGTAACGGTGCAGTA
GCCTTCGTCGATTTTGCTAACAAAACTATAACAGTTTAAGACAGGAAGCACCATGGATGAACAATCAGTCCTTCACATCCGCCAAGCCACCTGTTGTAAT
CTGGAAAACGTCTTCTCCCTCGGGTAGGTTAGGGGCGTCAAAGATCTTGCAGACGCGCTGCTCGCCTTTGCCTTTCCTCAGCATCAACCGGATGGTGGCT
GCATGCGCCAACACGTGGCCTCCCGCCGGCTTTTTGGGGTCAGTTATGAAC