Detailed information on CNT30224742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677502Hordeum vulgareSetaria viridis47.8633.3390.18112forward
CNT30500458Hordeum vulgareCoffea canephora42.7417.8382100forward
CNT30270249Hordeum vulgareChenopodium quinoa33.763.9584.8179forward
CNT30381526Hordeum vulgareManihot esculenta38.0313.484.2789forward
CNT30287901Hordeum vulgareTriticum aestivum33.7629.8189.8779forward
CNT30393905Hordeum vulgareTriticum turgidum47.0133.8583.64110forward
CNT30314318Hordeum vulgareCamelina sativa32.9125.1685.7177forward
CNT30229639Hordeum vulgareAnanas comosus38.4615.3186.6790forward
CNT30655297Hordeum vulgareRosa chinensis32.9113.9289.6177forward
CNT30714734Hordeum vulgareMalus domestica golden38.8916.5284.6291forward
CNT30722091Hordeum vulgareTriticum spelta55.1314.1493.02129forward
CNT30572236Hordeum vulgareVitis vinifera42.7416.8688100forward
CNT3023073Hordeum vulgarePopulus trichocarpa38.891084.6291forward
CNT30102429Hordeum vulgareOryza rufipogon33.7611.1187.3479forward
CNT30112612Hordeum vulgareFicus carica47.8612.2782.14112forward
CNT30333205Hordeum vulgareCynara cardunculus31.6224.583.7874forward

Expression of CNT30224742

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIHIRCPFECVQLRKLLIISGLCCDGEASVHTSYHLEKSLE

>peptide 2 (37 aa)
DHDRRGPVLPSQQTLEERVQMNNHPEREEELPEERPP*

Sequence

>CNT30224742
CGATCACGATCGTCGGGGTCCTGTTCTGCCTTCCCAACAGACCCTTGAGGAACGGGTACAGATGAACAATCACCCAGAACGCGAAGAAGAGCTTCCCGAA
GAGAGGCCCCCATGATTCATATCCGTTGTCCATTTGAATGTGTACAGCTCAGAAAACTCCTCATCATCTCCGGCCTTTGTTGTGACGGTGAAGCTAGTGT
CCACACCAGCTATCACCTTGAGAAGTCCTTGGAA