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Detailed information on CNT3022472


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712535Populus trichocarpaGlycine max18.1525.5489.62106forward
CNT3059692Populus trichocarpaArabidopsis lyrata14.7329.7687.2186forward

Expression of CNT3022472

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHEIRPLRIANDYRPAARQTELFISTNKISIAQKG*

Sequence

>CNT3022472
GAGAGAGCAATAATTTGTTTCGTCCAAAGAACACATTACTACATTTTGCTGCTGTTCTAATGCAAACTTAACAGGCATTTGTTACTTCCAGTGCCCTCAA
TTCAAACAAAATTTCACACATTTTCACACCAGCACTGGGAACAAAATGCGAAGGATAAGAAAAACCAAAGGAAAAAAAAAAAAAAGAAATGAAAATGAAT
AGGGTATCTTAATGCATGAGATTAGACCATTGAGGATAGCTAACGATTATAGACCAGCAGCAAGACAAACCGAATTATTCATAAGTACCAATAAAATAAG
CATTGCGCAAAAGGGATAGGATAAATCACTCTTAAGCTTGAGGATAGCTAACGATTATAGACCAGCAGCAAGACAAACCGAATTATTCATAAGTACCAAT
AAAATAAGCATTGCGCAAAAGGGATAGGATAAATCACTCTTAAGCTTGAGGCTTCTCCCATTTGAGGGGCTTGACAACTTCCCAGGTGAAGTCTGGGTCA
TCCCTTCCAAAATGTCCGTATGCAGCTGTCTTCAAGAACCTATTACCCCCCCTCTTGAGATCCAGGTTGATGGTCATCATTCCA