« Back to Hordeum vulgare search


Detailed information on CNT30224680


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005134, E-value = 4e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678235Hordeum vulgareSetaria viridis41.9393.7183.04283forward
CNT30522059Hordeum vulgareSetaria italica45.6363.3783.12308forward
CNT30553198Hordeum vulgareOryza glaberrima41.0461.2883.75277forward
CNT30448340Hordeum vulgareSaccharum spontaneum26.6732.8586.67180forward
CNT30149Hordeum vulgareZea mays26.6732.7382.78180forward
CNT3067447Hordeum vulgareLeersia perrieri50.8160.7183.09343forward
CNT30351983Hordeum vulgareEragrostis tef9.9330.7389.5567forward
CNT30595883Hordeum vulgareOryza meridionalis39.8547.6183.27269forward
CNT30105637Hordeum vulgareOryza longistaminata41.0457.8383.75277forward
CNT30101734Hordeum vulgareOryza rufipogon50.8134.3380.76343forward
CNT30575480Hordeum vulgareOryza barthii41.0451.1183.75277forward
CNT30604101Hordeum vulgareOryza punctata14.0730.6585.2695forward

Expression of CNT30224680

Peptides detected in this lncRNA

>peptide 1 (34 aa)
YLNQQHPLSFTNYTKTLLCNPYNHYKERQSYDSN*

>peptide 2 (41 aa)
MTQLSPLKYTRRGNAHPFWKVKVSESFHMSSSDCTFPSGPA*

>peptide 3 (42 aa)
MEPDSDLKLAESLGSHSSYIVSQQSSQRSPEHQEWECPWLFC*

>peptide 4 (40 aa)
ISTNSILSVSQIIQKHYYVTHTITTKKGSHMIQIKCLRLL*

>peptide 5 (38 aa)
MASIYQTRKTFPAPFNLQNTNISAFLSATPVSSMQPWN*

Sequence

>CNT30224680
TATCTCAACCAACAGCATCCTCTCAGTTTCACAAATTATACAAAAACATTATTATGTAACCCATACAATCACTACAAAGAAAGGCAGTCATATGATTCAA
ATTAAATGTCTGCGTCTGCTATAAAATACAGAAGGTGCAACCGTAATTACCTAAATTGCAGTAACTAAGTTCACCAAAGTTTCCATGGCCAGTATATACC
AAACAAGAAAAACATTTCCAGCCCCTTTTAACTTACAAAACACAAACATATCAGCTTTCCTCAGCGCGACACCCGTCTCTTCTATGCAACCGTGGAATTG
AATGAACAAATGACCTGTTGCCGCGCACATCATGGAACCTGACAGCGACTTGAAGCTCGCTGAATCTCTTGGGTCTCATTCATCATACATAGTAAGCCAG
CAAAGTAGCCAACGCAGTCCAGAACACCAAGAGTGGGAGTGTCCATGGTTGTTTTGTTAGAGGGCTTGCACTAGGCAACCATGGATAGTCATCAGGAGAC
GGCATGACACAGTTATCACCATTGAAGTACACACGCCGCGGAAACGCCCATCCTTTCTGGAAGGTGAAAGTCTCTGAGTCCTTCCACATGAGTAGCTCTG
ACTGCACGTTTCCAAGCGGACCAGCTTGATTGAGCAAATCATTGTAGAACTTCTTTCCCCAGAACATTGCGGTGT