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Detailed information on CNT3022468


BLAST search results

BLAST vs Swiss-Prot:
sp|P31155|METK1_PETCR, E-value = 4e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639623Populus trichocarpaNymphaea colorata22.6937.2486.08194forward
CNT30381493Populus trichocarpaManihot esculenta63.0471.9688.87539forward

Expression of CNT3022468

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MSVCSCLQEPITPPLEIQVDGHHSRPKVKALLHNLKDLLVRNFSSAIGNLHNAPTSKTICYDALGSLPNNVSTTPIHLSWVLP*

>peptide 2 (55 aa)
MGSPATIGVNNDLASSETCITMRTTNNKTARWVEVKDSFLIKVLLRDNRLDDILL*

>peptide 3 (43 aa)
MKMNRGILMHEIRPLRIANDYRPAARQTELFISTNKISIAQKG*

Sequence

>CNT3022468
GAGAGAGCAATAATTTGTTTCGTCCAAAGAACACATTACTACATTTTGCTGCTGTTCTAATGCAAACTTAACAGGCATTTGTTACTTCCAGTGCCCTCAA
TTCAAACAAAATTTCACACATTTTCACACCAGCACTGGGAACAAAATGCGAAGGATAAGAAAAACCAAAGGAAAAAAAAAAAAAAGAAATGAAAATGAAT
AGGGGTATCTTAATGCATGAGATTAGACCATTGAGGATAGCTAACGATTATAGACCAGCAGCAAGACAAACCGAATTATTCATAAGTACCAATAAAATAA
GCATTGCGCAAAAGGGATAGGATAAATCACTCTTAAGCTTGAGGCTTCTCCCATTTGAGGGGCTTGACAACTTCCCAGGTGAAGTCTGGGTCATCCCTTC
CAAAATGTCCGTATGCAGCTGTCTTCAAGAACCTATTACCCCCCCTCTTGAGATCCAGGTTGATGGTCATCATTCCAGGCCTAAAGTCAAAGCTCTCCTT
CACAATCTTAAGGATCTCCTTGTCAGGAATTTTTCCAGTGCCATAGGAAACTTGCACAATGCACCTACGAGCAAGACCATTTGCTACGATGCTCTTGGCA
GCTTGCCTAACAATGTAAGCACCACTCCTATCCACCTTAGTTGGGTCCTTCCCTGAGAAAGCACCACCACCATGGGCTCCCCAGCCACCATAGGTGTCAA
TAATGATCTTGCGTCCAGTGAGACCTGCATCACCATGAGGACCACCAATAACAAAACGGCCAGATGGGTTGAGGTGAAAGATAGTTTTCTCATCAAGGTA
CTTCTCCGGGATAACAGGCTTGATGACATACTCCTTTAGATCAGCGGCAATTTCA