Detailed information on CNT30224666


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672513Hordeum vulgareSetaria viridis24.3213.588.8954forward
CNT30377828Hordeum vulgareArabidopsis thaliana26.5817.188.1459forward
CNT30711924Hordeum vulgareGlycine max49.5520.0483.64110forward
CNT30555770Hordeum vulgareOryza glaberrima45.0526.5388100forward
CNT30264857Hordeum vulgareBrassica rapa40.9930.2382.4291forward
CNT30478263Hordeum vulgareArabidopsis halleri25.2316.1887.556forward
CNT30619828Hordeum vulgareCajanus cajan44.1427.0782.6598forward
CNT30597221Hordeum vulgareOryza meridionalis45.0546.7389100forward
CNT30105511Hordeum vulgareOryza longistaminata45.054087100forward
CNT30104583Hordeum vulgareOryza rufipogon45.0547.1789100forward
CNT30578474Hordeum vulgareOryza barthii45.055088100forward
CNT30118059Hordeum vulgareOryza nivara45.0534.1388100forward
CNT30604899Hordeum vulgareOryza punctata45.0542.9289100forward

Expression of CNT30224666

Peptides detected in this lncRNA

>peptide 1 (72 aa)
TSTTFWAANASHDLISSSSLVSFTRSTAVCMSEQEVDTTSLSSAQMLRPSTTPAKRYFPAGKPLLTSSRVLVP

Sequence

>CNT30224666
TCACTTCAACGACCTTTTGGGCAGCAAACGCGAGCCATGACTTAATCTCATCATCAAGCTTGGTCTCATTTACAAGGTCCACAGCAGTGTGCATGAGTGA
GCAAGAGGTCGATACAACAAGCTTGTCATCAGCCCAAATGTTGCGTCCATCTACAACACCAGCAAAAAGGTACTTTCCAGCAGGGAAACCACTCTTGACA
AGCTCAAGAGTCTTGGTTCCAC