Detailed information on CNT30224654


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 2e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640127Hordeum vulgareNymphaea colorata18.0134.4683.27275forward
CNT30517711Hordeum vulgareJuglans regia12.937.1783.76197forward
CNT30702815Hordeum vulgareQuercus lobata10.8144.8483.03165forward
CNT30504800Hordeum vulgareNicotiana attenuata8.973186.13137forward
CNT30709049Hordeum vulgareGlycine max20.545.1784.03313forward
CNT3086234Hordeum vulgareVigna radiata17.4250.1982.71266forward
CNT3059767Hordeum vulgareArabidopsis lyrata14.631.4580.72223forward
CNT30229012Hordeum vulgareAnanas comosus15.9829.4385.25244forward
CNT30204030Hordeum vulgareHelianthus annuus14.2152.2982.95217forward
CNT30624589Hordeum vulgareDaucus carota6.8821.1783.81105forward
CNT30720142Hordeum vulgareTriticum spelta11.247.7787.13171forward
CNT30340361Hordeum vulgareEragrostis tef6.9420.2793.4106forward
CNT30597037Hordeum vulgareOryza meridionalis12.0535.1194.02184forward
CNT30430260Hordeum vulgarePapaver somniferum13.4935.482.52206forward
CNT30571197Hordeum vulgareVitis vinifera20.0477.6681.05306forward
CNT30106557Hordeum vulgareOryza longistaminata6.9449.5388.68106forward
CNT3024728Hordeum vulgarePopulus trichocarpa17.2932.5184.47264forward
CNT30333509Hordeum vulgareCynara cardunculus9.7627.0983.89149forward

Expression of CNT30224654

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MSLENTLIEQSLSCRFVRVFEVYPISSWLLWLGSFASIACGCGKDRKSLTSMLNARRNQGRCLQRVETTLLLAAVIRSILTAKCRQSAR*

>peptide 2 (56 aa)
MPSPTYQWTKARLAYMRSNLWSMREKTSTTLVELEIMQTALCTLARSPPGTTVGGW*

>peptide 3 (37 aa)
MKNLMGLLHLRILRVILWGESNLLNIIYSCFGRDLNH*

>peptide 4 (67 aa)
MKWILGYGTRLVWNSVTSTFRAPSNLREVVRDEITYTQTNSSSSITGTAKKYFNPDERIGQWRVVST*

Sequence

>CNT30224654
AAAGAAAGTCTTTTGAGGCAATGAAGCACGCTAGGGTAGGCATTCAATAAACAATCCATGTCGTTGGCAAACCATATGGCATATAAGGATCACATCAGTC
GCGCGGTTTCATCTCGTCGAGAATCGTAAGATCCACATCTTTCAATACGCCGTTGTCGATCGCATTGCACACCAGTGGTCTAATGTCACTTGAGAACACG
CTGATCGAGCAAAGCTTGAGCTGCAGGTTTGTGAGGGTCTTCGAGGTTTATCCAATAAGCTCCTGGCTGCTTTGGTTAGGGTCATTTGCCTCAATTGCAT
GTGGGTGTGGAAAAGATAGGAAATCCTTGACGTCGATGTTGAACGCGCGAAGAAACCAAGGCAGATGTCTCCAACGTGTAGAGACCACACTTCTCCTTGC
AGCTGTAATTAGGTCCATTCTGACAGCAAAATGTCGTCAGTCAGCACGCTGAGTCTGTCTCCTCGTCTGGGCTTTCCTCAGCATAAAGAAAGCGGACGAT
ATATTCTTACTTGACCGGGTTCAATATTATTTAGCTCCATCAATGAAGAATCTAATGGGGCTTCTGCACCTTCGAATCTTACGAGTGATTCTTTGGGGAG
AAAGCAATCTTCTGAACATTATTTATAGCTGCTTCGGAAGGGACCTAAACCACTAATCGGGCTCGAAACTTGCAACGTGGAACTTGGAATTGAAAGAGGA
TGGAAACCTAGAATGAGGACGGAAATCAGGACAGCAACGGAAATAACACTGTAACGAAGCAGGACAGAACAAATTAAGCGAGATACTTGTTCCACGAAGT
ACTAATGATGCAGTTCAACAGCGACATAGAAAGCACCGATGGCTTACAACCTCACCCCAAAACAGGACGGCAAAGCAACATGTAGTTAAAGATAGGCGGC
AGAGGAGACGGATCCTCCGTCGAGCGGACGAGCAGATCAGTAGTCGTCGTCCTCCTCGCCATCCTCGTCGTCGCCGCCCTCTGCGCCGACCTCCTCGTAG
TCCTTCTCCAGGGCGGCCAGGTCCTCACGGGCCTCCGAGAACTCGCCCTCCTCCATGCCCTCGCCCACGTACCAGTGGACGAAGGCGCGCTTGGCGTACA
TGAGGTCGAACTTGTGGTCAATGCGGGAGAAGACCTCGACGACGCTGGTGGAGTTGGAGATCATGCAGACGGCCCTCTGCACCTTGGCCAGGTCGCCGCC
GGGCACCACAGTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGATGACCGGC
GCGTAGGACGAGAGCATGAAGTGGATCCTAGGGTACGGCACAAGGTTGGTCTGGAACTCGGTCACGTCCACGTTCAGGGCACCATCAAACCTCAGGGAGG
TGGTCAGAGATGAGATAACCTACACACAGACAAACAGCTCAAGTTCCATTACTGGTACAGCAAAGAAATACTTCAATCCGGATGAAAGAATTGGGCAATG
GCGGGTGGTCAGTACCTGAGAGACGAG