Detailed information on CNT30224612


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712266Hordeum vulgareGlycine max14.9631.0288.2485forward
CNT30298225Hordeum vulgareTriticum aestivum49.4736.7389.32281forward
CNT30394033Hordeum vulgareTriticum turgidum49.320.6993.93280forward
CNT30510308Hordeum vulgareSolanum lycopersicum17.9639.5387.25102forward
CNT30554643Hordeum vulgareOryza glaberrima26.4131.5888.67150forward
CNT30441217Hordeum vulgareAegilops tauschii43.8433.5191.57249forward
CNT30250974Hordeum vulgareAvena sativa46.6561.6386.42265forward
CNT30665102Hordeum vulgareTriticum dicoccoides47.7165.4693.73271forward
CNT30107297Hordeum vulgareOryza longistaminata18.1322.9493.2103forward
CNT30149623Hordeum vulgareBrachypodium distachyon44.0152.0884.8250forward
CNT30103269Hordeum vulgareOryza rufipogon44.3728.0390.08252forward
CNT30594767Hordeum vulgareEragrostis curvula10.9224.0391.9462forward

Expression of CNT30224612

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MDIRRRAALALSRPPPSCSHRHHPPGAACRCRSQAPHRPHQCSGQA*

>peptide 2 (71 aa)
MSVSFSGASSSSSMLRPSLSMRWILVPKVLGSFTDLSFLSASARLRSSSMMAFSGLISMVFLLDIDDDLLHL

Sequence

>CNT30224612
GGACCTAGAAAAATGAACCCAGAAGTGGGGGCCTCACAAGCTTAAGAGAAAACATACTAAAAGCAGATGAAAGCAATAAGCAGGGAATATAGAAGAAATA
TAGCTAACATATAGTAGAACCAACAATAACCGAACTGTTCCACGAGTACCACAAATAAGCTAACCGCGCTTAATGTTTGGCCAGCCAAAAGACAAAACCG
ATACAGCTAAGACGTGCCAAAACCATCCAACGACGACACTAAGATAAAAGCAACTAGACGGTGCAGGGCATGGACATACGACGACGGGCAGCCTTGGCGC
TTAGTCGACCTCCTCCATCTTGCTCTCACCGGCATCATCCTCCAGGGGCGGCATGTCGGTGTCGTTCTCAGGCGCCTCATCGTCCTCATCAATGCTCAGG
CCAAGCTTGAGCATGCGGTGGATCCTGGTGCCGAAGGTGTTGGGGTCCTTCACCGACTTGTCGTTCTTGTCGGCGTCGGCACGCTTGCGGAGCTCGTCCA
TGATGGCGTTCTCAGGGTTGATCTCCATGGTCTTCTTGCTAGACATAGACGATGACCTTCTCCACCTT