Detailed information on CNT30224448


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Hordeum vulgareSetaria viridis98.6156.9397.05780forward
CNT30519050Hordeum vulgareJuglans regia100.1370.494.07792forward
CNT30619379Hordeum vulgareSesamum indicum85.5986.7993.06677forward
CNT30200729Hordeum vulgarePisum sativum100.1332.5794.32792forward
CNT3048154Hordeum vulgarePrunus dulcis100.1375.594.07792forward
CNT30544401Hordeum vulgareBrassica napus100.1361.9294.44792forward
CNT30239033Hordeum vulgareBrassica oleracea100.1358.3294.32792forward
CNT30444212Hordeum vulgareAegilops tauschii99.3760.4298.22786forward
CNT30261854Hordeum vulgareBrassica rapa98.6173.1794.36780forward
CNT3010382Hordeum vulgareZea mays100.6385.2293.47796reverse complement
CNT30206557Hordeum vulgareHelianthus annuus89.2532.7394.33706forward
CNT30365254Hordeum vulgareSorghum bicolor98.9986.5296.04783forward
CNT30413997Hordeum vulgarePapaver somniferum82.9378.5694.66656forward
CNT3036408Hordeum vulgareCucumis melo100.1374.9394.7792forward

Expression of CNT30224448

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRPSQKSGFVARISSRITTVIRVARTIKQTI

>peptide 2 (36 aa)
MRSVDYHESSDQRAEPTSAFYLINAPLPKVGVCCTY*

>peptide 3 (54 aa)
MIYPHHDEISQDYPGLSAKDIYSLNTSVQRTCGPEHLRESETCYCLKLPSPKRR*

Sequence

>CNT30224448
TGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATC
ACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGATATATACTCGTTGAATACATCAGTGCAGCGCACGTGCGGCCCAGAACATCTAAGGGA
ATCAGAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGCTGCGGAGGGATGGCTCCACATAGCTAGTTAGCA
GGCTGAGGTCTCGTTCTTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTTA
GTCTGTCAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC
TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
AATGATGCGTCGCCGACACAAAGGCCATGCGATCCGTCGATTATCATGAATCATCGGATCAGCGAGCAGAGCCCACGTCAGCCTTTTATCTAATAAATGC
GCCCCTCCCAAAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCACGTACCATCAAACAAACTATAAC