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Detailed information on CNT30224420


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 8e-164

BLAST vs NONCODE:
NONMTRT001605, E-value = 1e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440257Hordeum vulgareAegilops tauschii67.0593.890.34590forward
CNT30149090Hordeum vulgareBrachypodium distachyon5045.0886.36440forward

Expression of CNT30224420

Peptides detected in this lncRNA

>peptide 1 (61 aa)
PVTMACTKKPNMENMARRPFLTSLTLSSANASGWSARPSGSKLPPGYNGSTISPSGPPAMR*

>peptide 2 (47 aa)
AGDNGLHKETKHGEHGEAAVLDLLNLELGECLRVVSKAERVEAATRV*

>peptide 3 (38 aa)
MPQGGQQGRAGRSCHPGIMGQRSHQVVHQQCGNPQRHP*

>peptide 4 (37 aa)
MVTRASPKRDDDGKFFTALPAKAGEESDMVVAAILIN*

Sequence

>CNT30224420
TGCCGGTGACAATGGCTTGCACAAAGAAACCAAACATGGAGAACATGGCGAGGCGGCCGTTCTTGACCTCCTTAACCTTGAGCTCGGCGAATGCCTCAGG
GTGGTCAGCAAGGCCGAGCGGGTCGAAGCTGCCACCCGGGTATAATGGGTCAACGATCTCACCAAGTGGTCCACCAGCAATGCGGTAACCCTCAACGGCA
CCCATGAGCACAACCTGACAAGCCCAAATGGCAAGGATACTCTGGGCGTGCACAAGGCTTGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCT
GGGATCCAGCCTTGAACCAAACAGCCTCACCAAACTTAACACCGTTGCGGGCAAGCAGCTCGGGGAAGACACAACCGAGTGCGCCAAGCATAGCCCACCG
ACAATGAATCACCTCCAGCTCACGGTTCTTGGCGAAGGTCTCAGGGTCAGCTGATAACCCGGCAGTGTCCCAGCCGTAGTCACCAGGGAACTCCCCGGTG
AGGTAGCTCGGGGGCTCGCCAGAAAGCGGACCGAGGTAGAGCACACGGTCAGAGCCGTACCATGGGCTGTCGGAGGCAACCTGCTTGGCCTTTGCCGCCG
TCTTGCGCATGGTGACACGTGCCTCGCCAAAAAGAGACGATGATGGCAAGTTCTTCACTGCCTTGCCAGCAAAGGCTGGGGAAGAGAGTGACATGGTCGT
TGCGGCCATTCTGATCAATTGAGGTTCTGTGTGTTCAAGAGTGAGGAATGTGTGTGGAGATGGCTTGAGAAGATTGGAGCAAGAGCCTTCTTAAGGAAGT
GGACGCAGAGAGGGAATCGACCGCTGTAGGCTGAGAGGAGAGAGGTGTATAGCCAGAAATCTATATCTTGGATGTCATTG