Detailed information on CNT30224394


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-48

BLAST vs NONCODE:
NONGMAT000508, E-value = 9e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375418Hordeum vulgareArabidopsis thaliana37.9755.5182.44131forward
CNT30434711Hordeum vulgareAegilops tauschii84.3550.3595.88291forward
CNT30261175Hordeum vulgareBrassica rapa45.833.4779.75158forward
CNT30679491Hordeum vulgareTriticum urartu84.0644.2196.9290forward
CNT30720165Hordeum vulgareTriticum spelta2014.7192.7569forward

Expression of CNT30224394

Peptides detected in this lncRNA

>peptide 1 (29 aa)
LHQRPRTLELSKSGWWPSLRSRRGCAPGA*

Sequence

>CNT30224394
CATTACACCAACGACCACGAACCCTAGAACTCTCTAAATCTGGTTGGTGGCCTAGCCTCCGAAGCCGTAGAGGGTGCGCCCCTGGCGCTTGAGTGCGTAG
ACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGA
CGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCTGCGCGCGAG
ACGACGGATGGCCGGCTTGGTGATGCCCTGGATGTTGTCCCGGAG