Detailed information on CNT30224390


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Hordeum vulgareOryza sativa30.5524.4289.29168forward
CNT30675663Hordeum vulgareSetaria viridis31.6437.4287.36174forward
CNT30379122Hordeum vulgareManihot esculenta17.0921.4684.0494forward
CNT30187559Hordeum vulgareSecale cereale77.4563.8792.72426forward
CNT3012962Hordeum vulgareZea mays30.9126.1183.53170forward
CNT30721901Hordeum vulgareTriticum spelta71.8277.4590.13395forward
CNT30352420Hordeum vulgareEragrostis tef3228.4386.36176forward
CNT30366950Hordeum vulgareSorghum bicolor31.0919.9887.13171forward
CNT30103353Hordeum vulgareOryza rufipogon31.6417.3389.08174forward
CNT30584451Hordeum vulgareEchinochloa crusgalli31.8232.6587.43175forward

Expression of CNT30224390

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MSVSFSGASSSSSMLRPSLSMRWILVPKVLGSSRLKPEVSREVRLGHANAAVDDRERAGRLVGDDVDEELGLRIE

>peptide 2 (46 aa)
MDIRRRAALALSRPPPSCSHRHHPPGAACRCRSQAPHRPHQCSGQA*

Sequence

>CNT30224390
GGGGCCTCACAAGCTTAAGAGAAAACATACTAAAAGCAGATGAAAGCAATAAGCAGGGAATATAGAAGAAATATAGCTAACATATAGTAGAACCAACAAT
AACCGAACTGTTCCACGAGTACCACAAATAAGCTAACCGCGCTTAATGTTTGGCCAGCCAAAAGACAAAACCGATACAGCTAAGACGTGCCAAAACCATC
CAACGACGACACTAAGATAAAAGCAACTAGACGGTGCAGGGCATGGACATACGACGACGGGCAGCCTTGGCGCTTAGTCGACCTCCTCCATCTTGCTCTC
ACCGGCATCATCCTCCAGGGGCGGCATGTCGGTGTCGTTCTCAGGCGCCTCATCGTCCTCATCAATGCTCAGGCCAAGCTTGAGCATGCGGTGGATCCTG
GTGCCGAAGGTGTTGGGGTCCTCAAGGCTGAAGCCCGAGGTGAGCAGAGAGGTCCGACTTGGTCATGCCAATGCCGCTGTCGACGATCGTGAGCGTGCTG
GTCGCCTTGTCGGGGATGATGTGGATGAAGAGCTCGGGCTGCGCATCGAG