« Back to Populus trichocarpa search


Detailed information on CNT3022439


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 7e-70

BLAST vs NONCODE:
NONPOPT000587, E-value = 7e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372626Populus trichocarpaArabidopsis thaliana36.637.2983.26239forward
CNT30188823Populus trichocarpaSecale cereale34.7626.7780.62227forward

Expression of CNT3022439

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MKMNRGILMHEIRPLRIANDYRPAARQTELFISTNKISIAQKG*

>peptide 2 (52 aa)
MSVCSCLQEPITPPLEIQVDGHHSRPKVKALLHNLKDLLVRNFSSAIGVHKD*

Sequence

>CNT3022439
GAGAGAGCAATAATTTGTTTCGTCCAAAGAACACATTACTACATTTTGCTGCTGTTCTAATGCAAACTTAACAGGCATTTGTTACTTCCAGTGCCCTCAA
TTCAAACAAAATTTCACACATTTTCACACCAGCACTGGGAACAAAATGCGAAGGATAAGAAAAACCAAAGGAAAAAAAAAAAAAAGAAATGAAAATGAAT
AGGGGTATCTTAATGCATGAGATTAGACCATTGAGGATAGCTAACGATTATAGACCAGCAGCAAGACAAACCGAATTATTCATAAGTACCAATAAAATAA
GCATTGCGCAAAAGGGATAGGATAAATCACTCTTAAGCTTGAGGCTTCTCCCATTTGAGGGGCTTGACAACTTCCCAGGTGAAGTCTGGGTCATCCCTTC
CAAAATGTCCGTATGCAGCTGTCTTCAAGAACCTATTACCCCCCCTCTTGAGATCCAGGTTGATGGTCATCATTCCAGGCCTAAAGTCAAAGCTCTCCTT
CACAATCTTAAGGATCTCCTTGTCAGGAATTTTTCCAGTGCCATAGGTGTCCACAAAGACTGACAAAGGCTCAGGTACACCAATAGCATAGGAAACTTGC
ACAATGCACCTACGAGCAAGACCATTTGCTACGATGCTCTTGGCAGCTTGCCT