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Detailed information on CNT30224357


BLAST search results

BLAST vs Swiss-Prot:
sp|A1E9M9|RR3_HORVU, E-value = 4e-118

BLAST vs NONCODE:
NONORUT000960, E-value = 2e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694723Hordeum vulgareOryza sativa46.4915.4992.74702forward
CNT30405603Hordeum vulgareBeta vulgaris11.2622.2581.18170forward
CNT30503443Hordeum vulgareNicotiana attenuata11.7252.3782.49177forward
CNT3047594Hordeum vulgarePrunus dulcis18.2139.1780.36275forward
CNT30185636Hordeum vulgareSecale cereale46.2345.0398.42698forward
CNT30294378Hordeum vulgareTriticum aestivum57.6242.6396.32870forward
CNT30396291Hordeum vulgareTriticum turgidum25.7100.7896.65388reverse complement
CNT30585847Hordeum vulgareMusa acuminata9.2721.4485.71140forward
CNT3086712Hordeum vulgareVigna radiata11.5258.3982.76174forward
CNT30553747Hordeum vulgareOryza glaberrima44.0446.7389.32665reverse complement
CNT30442098Hordeum vulgareAegilops tauschii20.9347.7396.84316forward
CNT30257804Hordeum vulgareAvena sativa43.5199.794.37657forward
CNT30656274Hordeum vulgareTriticum dicoccoides17.5553.2196.23265forward
CNT3060130Hordeum vulgareArabidopsis lyrata19.0731.4180.56288forward
CNT30447455Hordeum vulgareSaccharum spontaneum19.7441.588.93298forward
CNT30135270Hordeum vulgareLolium perenne53.2523.3989.68804forward
CNT3018340Hordeum vulgareZea mays20.9323.7293.35316forward
CNT30229832Hordeum vulgareAnanas comosus34.5744.3980.08522forward
CNT30713541Hordeum vulgareMalus domestica golden4.5732.0991.369reverse complement
CNT30689031Hordeum vulgareTriticum urartu100.0727.196.891511forward
CNT30344054Hordeum vulgareEragrostis tef13.6437.6688.35206reverse complement
CNT30371107Hordeum vulgareOryza glumipatula27.9510091.47422forward
CNT30147990Hordeum vulgareBrachypodium distachyon29.4729.3989.66445reverse complement
CNT30604560Hordeum vulgareOryza punctata38.8158.1993.52586forward
CNT30557814Hordeum vulgarePanicum hallii43.8464.0290.48662forward

Expression of CNT30224357

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MDSARAISFPPRRPAIFTFTPLISAFLVNSMAFFIAFRNETLFFNWKAIYSARMLGCL*

>peptide 2 (92 aa)
MVRSESRNGASKKFLSELIFSVLLTRATLYYCLKFVVLLSSYDFSFSISFIILMLFHIAFYDVIHRPYTVEFYILFISSSFFLSSLPLSTSL*

>peptide 3 (35 aa)
MTHLLIYDRGIYSYSDCFLVRISTIRSNRLVISIS*

>peptide 4 (39 aa)
KEDLEYIQMCVDIYLNSIFIDNNVVLLKNILIFTLIESR*

Sequence

>CNT30224357
AAAGAAGATCTAGAATATATCCAGATGTGTGTGGATATTTATCTAAATTCTATATTTATAGATAATAATGTAGTCCTTCTAAAAAATATCCTTATTTTTA
CTCTTATTGAATCACGGTAAAGTATTCTAATTCAATAAGAATTTCGCGGGCGAATATTTACTCTTTCCTGTCTTATTTGTTAATTTATAAACTTACCAAA
TAAGACAATTTTTTTGGTTTGTTCCGCCATCCCACCCAATGAAGTGTTAGGATTCTTTTCAATAAAATCCTATGGAATCATAGGTTCTCTCGTTCCCACT
GCTTCTCCTTGAATGGTTAGGTCTGAATCCCGCAACGGAGCTTCCAAAAAATTTCTTTCCGAGTTAATTTTCTCAGTTTTATTAACCCGGGCGACTCTTT
ATTATTGCTTAAAATTTGTAGTTCTTCTTTCAAGTTACGATTTTTCATTCTCTATTAGTTTTATTATATTGATGCTTTTTCACATTGCCTTTTATGATGT
AATTCATAGACCATACACAGTGGAATTCTATATCTTATTTATTTCCTCTTCCTTCTTTCTATCATCCCTCCCTTTATCCACATCCCTTTAGTTTTGCTTC
ACAACCTAGAATCCCATTTATTTTTTAGATAAAAAAGTGCAGTTGCTACAACTATATGACACATCTACTCATTTATGATAGAGGTATTTATTCATATAGT
GACTGTTTCTTAGTTAGGATCTCGACAATACGAAGCAATAGGTTGGTTATTAGTATTAGTTAATTTTCTATAATTACTAAGTTTTTTTCTTTAAAAAAGA
AAAAAAAATAACGAGTCACACACTAAGCATAGCAATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAGGTAGAATTTCTTCTTTTGC
AGGGATTTCAGGATAAAAGTCTCTTGTCATTTTTTATTCTATCAATGGACAGAATTCGAAGACAAGATTAGTTATTCTTCGTCTACGAATATCCAAATTT
TTACACCTAATACTCCATAGATAGTTCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGGATTGTTTGGAGGGGAAGTCTGCCCCTTTTAATGGATTC
GGCACGTGCAATTTCTTTTCCTCCGAGACGACCCGCAATTTTTACTTTTACTCCCCTTATATCTGCTTTTTTAGTTAATTCAATGGCTTTTTTCATTGCC
TTTCGGAATGAAACTCTATTTTTTAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGCTGTCTATAAGGTTCTTTAACTTTTTCGATAGAAATATTAA
ATCTCTGGTTTACAGAGTTAATTTCCTTTTGTAGATCTTTCTCTAATTCTTCGATTGCTCCTTTTTTCTTTAATAAATTTGGGAATCCAATATGGATTAT
GACGTGGATCGTATCGATTTCTTTTTGAATTTCTATATGTGTAATTACTTCGGAACTTGAACCTGAGTCCATTTTTCTATTATGTGTAATTACTTCGGAA
CTTGAGAATT