CANTATAdb - search

Detailed information on CNT30224354

BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 5e-114

BLAST vs NONCODE:
NONGMAT000778, E-value = 7e-49

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674834	Hordeum vulgare	Setaria viridis	41.81	33.85	94.47	217	forward
CNT30532226	Hordeum vulgare	Eucalyptus grandis	65.7	47.16	85.34	341	forward
CNT30316236	Hordeum vulgare	Corylus avellana	47.59	53.81	84.21	247	forward
CNT30547574	Hordeum vulgare	Ipomoea triloba	46.44	67.89	85.48	241	forward
CNT30512729	Hordeum vulgare	Juglans regia	99.23	50.05	82.14	515	forward
CNT30371838	Hordeum vulgare	Arabidopsis thaliana	76.49	30.1	82.62	397	forward
CNT30276060	Hordeum vulgare	Chenopodium quinoa	67.05	54.89	81.9	348	forward
CNT3019597	Hordeum vulgare	Citrullus lanatus	35.07	24.33	83.52	182	forward
CNT30379936	Hordeum vulgare	Manihot esculenta	45.28	70.36	86.38	235	forward
CNT30405823	Hordeum vulgare	Beta vulgaris	39.5	45.56	84.39	205	forward
CNT30488117	Hordeum vulgare	Olea europaea	46.05	48.98	84.1	239	forward
CNT30711584	Hordeum vulgare	Glycine max	66.86	49.29	83.57	347	forward
CNT3045373	Hordeum vulgare	Prunus dulcis	67.44	44.64	82.57	350	forward
CNT30191304	Hordeum vulgare	Secale cereale	100	39.89	96.53	519	forward
CNT30300473	Hordeum vulgare	Triticum aestivum	96.53	51.76	95.61	501	forward
CNT30395070	Hordeum vulgare	Triticum turgidum	96.53	65.49	93.41	501	forward
CNT30561656	Hordeum vulgare	Actinidia chinensis	99.61	36.93	84.14	517	forward
CNT30510505	Hordeum vulgare	Solanum lycopersicum	86.9	41.53	86.03	451	forward
CNT30552635	Hordeum vulgare	Oryza glaberrima	77.07	38.54	89.5	400	forward
CNT30441158	Hordeum vulgare	Aegilops tauschii	100	68.38	95.57	519	forward
CNT30309793	Hordeum vulgare	Camelina sativa	71.68	47.81	84.41	372	forward
CNT3059659	Hordeum vulgare	Arabidopsis lyrata	42.2	50.46	82.19	219	forward
CNT30135610	Hordeum vulgare	Lolium perenne	54.53	33.45	91.87	283	forward
CNT3014085	Hordeum vulgare	Zea mays	60.69	51.64	90.16	315	forward
CNT30605685	Hordeum vulgare	Gossypium raimondii	84.78	57.59	83.18	440	forward
CNT30683923	Hordeum vulgare	Triticum urartu	96.53	54.75	93.61	501	forward
CNT30345702	Hordeum vulgare	Eragrostis tef	62.62	40.22	89.23	325	forward
CNT30596122	Hordeum vulgare	Oryza meridionalis	66.86	50.14	90.78	347	forward
CNT30359537	Hordeum vulgare	Lactuca sativa	60.31	47.5	81.79	313	forward
CNT30369654	Hordeum vulgare	Oryza glumipatula	76.49	45.11	89.67	397	forward
CNT30153558	Hordeum vulgare	Prunus persica	32.18	49.41	83.23	167	forward
CNT30107537	Hordeum vulgare	Oryza longistaminata	66.86	37.76	89.05	347	forward
CNT30332479	Hordeum vulgare	Dioscorea rotundata	22.93	42.05	85.71	119	forward
CNT30149525	Hordeum vulgare	Brachypodium distachyon	22.54	38.74	91.45	117	forward
CNT30100253	Hordeum vulgare	Oryza rufipogon	77.07	36.3	89.5	400	forward
CNT30575986	Hordeum vulgare	Oryza barthii	81.31	35.73	91	422	forward
CNT30497701	Hordeum vulgare	Digitaria exilis	62.43	99.69	92.9	324	forward
CNT30116094	Hordeum vulgare	Oryza nivara	77.07	45.45	89.5	400	forward
CNT30604019	Hordeum vulgare	Oryza punctata	58.77	90.24	91.48	305	forward

Expression of CNT30224354

Peptides detected in this lncRNA

>peptide 1 (99 aa)
GLDVVEWGTLPLHLLKHVSSLLIQHTIDTTKRILRRLDLNQVHRLQQPWLSSELRSVNDPPGCWDDLATTPVNSISVQNNITDLKANATHVLLSQCTFL*

>peptide 2 (85 aa)
MPRMFSSANAPSFDAHWNPATTESLISLRYCTPLHMSTTMFGPVVSGPKHQIFLARSLSHPNSSERILERTLGSSRGPMRPSSIAS

Sequence

>CNT30224354
AGGCCTTGATGTTGTAGAGTGGGGTACCTTGCCTCTGCATCTCCTCAAACACGTGTCCTCTCTTCTGATTCAGCACACCATAGATACCACCAAGCGCATT
CTCCGGCGCCTGGATCTCAACCAGGTACACAGGCTCCAGCAGCCTTGGCTTAGCAGTGAGCTGAGAAGCGTAAATGACCCTCCTGGCTGTTGGGATGACC
TGGCCACCACCCCTGTGAATAGCATCAGTGTGCAGAACAACATCACAGACCTCAAAGCAAATGCCACGCATGTTCTCCTCAGCCAATGCACCTTCCTTTG
ATGCCCATTGGAACCCAGCCACAACAGAATCCTTGATTTCATTGAGATACTGCACTCCCTTACACATGTCAACAACCATGTTCGGGCCAGTCGTTTCAGG
TCCAAAGCACCAAATCTTCTTGGCAAGATCCTTGTCCCACCCGAACTCCTCAGAGAGGATCTTGGAACGCACCTTGGGATCATCACGTGGGCCAATGCGG
CCATCATCAATAGCCTCAG