Detailed information on CNT30224330


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 4e-102

BLAST vs NONCODE:
NONSLYT002586, E-value = 2e-88

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640184Hordeum vulgareNymphaea colorata65.2241.6182.54315forward
CNT30547471Hordeum vulgareIpomoea triloba43.8939.1983.49212forward
CNT30512774Hordeum vulgareJuglans regia97.5237.7483.44471forward
CNT30372970Hordeum vulgareArabidopsis thaliana45.3444.4285.84219forward
CNT3019595Hordeum vulgareCitrullus lanatus31.6827.5783.66153forward
CNT30192963Hordeum vulgareSecale cereale54.4549.2597.34263forward
CNT3085191Hordeum vulgareVigna radiata33.3322.4583.85161forward
CNT30543621Hordeum vulgareBrassica napus18.4334.7783.1589forward
CNT30510528Hordeum vulgareSolanum lycopersicum10037.583.85483forward
CNT30665536Hordeum vulgareTriticum dicoccoides82.460.3997.74398forward
CNT30309902Hordeum vulgareCamelina sativa10042.5982.61483forward
CNT30263667Hordeum vulgareBrassica rapa98.7667.4783.23477forward
CNT30612239Hordeum vulgareArabis alpina10018.3982.82483forward
CNT30448454Hordeum vulgareSaccharum spontaneum99.3826.0386.04480forward
CNT30716253Hordeum vulgareMalus domestica golden10036.4385.09483forward
CNT30479087Hordeum vulgareArabidopsis halleri20.2933.6887.7698forward
CNT30705326Hordeum vulgarePrunus avium10037.5985.3483forward
CNT3024028Hordeum vulgarePopulus trichocarpa69.9845.7486.09338forward
CNT30557952Hordeum vulgarePanicum hallii59.4235.2185.02287forward

Expression of CNT30224330

Peptides detected in this lncRNA

>peptide 1 (45 aa)
KDTSKGKESTLVRCWNHLGDIQHKRTIRVTVSDSICIYVIKGTLV*

>peptide 2 (61 aa)
AKTRPKAKNLPLSDAGIILETYSIRGPSGSQFLIAFAYMSSRGPSYKFSTRYLCAFEGEGR*

Sequence

>CNT30224330
GCAAAGACACGTCCAAAGGCAAAGAATCTACCCTTGTCAGATGCTGGAATCATCTTGGAGACATACAGCATAAGAGGACCATCAGGGTCACAGTTTCTGA
TAGCATTTGCATATATGTCATCAAGGGGACCCTCGTATAAGTTCTCCACACGGTACCTCTGTGCCTTTGAAGGAGAGGGGAGGTGAAATATCATCATCTC
AAGCAGAGCACGACTGGCAGGCAGCCAAGTTTGCATCACACGCTTCATGAGAGCCTTGCCCATCAAGTCCTTCTCATCATTCTTCATGGTCACACCAAGC
TTCTTCAACATAGGCCACAACTTATCCTTCTGATCATTCATGCAGGTGGCTATGATTTGCTTGATTGGCTCATAGCAGAACTGAACAAAACCTCTCTTGC
AGGTAGCTGTCCCAGTGTTCTTAGAGGTCCATTTCTTTGTGGCTGGGTCAAAGAAGTTCTCACCCCACAGCCTCTCCATCATC