Detailed information on CNT30224319


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440859Hordeum vulgareAegilops tauschii5.5739.9486.01143forward
CNT30687812Hordeum vulgareTriticum urartu5.3361.7185.4137forward

Expression of CNT30224319

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MTGARASQAEVGQKEARETVVAGVQLREGRSTKRATRPV*

>peptide 2 (38 aa)
MQWKRSLLVMNPAFPPHCSCYCSGRDCKSCSQLLVSNK*

>peptide 3 (45 aa)
MTLSKYLKGQHQMNTQSTYVCLELQFEHGEIAKISNEQSTILLRI*

>peptide 4 (41 aa)
MSNPLWLVGPCDPCYINRGGGRDTTYEVRRCHTPHLKTHPM*

>peptide 5 (29 aa)
MCVWSFSLNMERSPKYLMNNRPSYYEFRH*

>peptide 6 (56 aa)
MQRNHSNRGKGHHHRDLDGGVFTLEVLIARRQRNGDGAAAADLLCTEKNKGAKGPP*

>peptide 7 (60 aa)
MLGRGEVSSTGENETRVSARGGCGRFLLQEKSTGDRWIVLNGPDRPGGETLAQPGRLGHN*

>peptide 8 (51 aa)
MVSEALGFNSFFGRKENNRERSLPTTNPSRAKYNPKKQKDHQRRALGPPVK*

>peptide 9 (52 aa)
MAPPLRIFSARKRTKGQKGPLDGGALSLRSSRAPARGAEEAPLHPVSLSLSV*

Sequence

>CNT30224319
GAGAACGATAAATACCAGTAGCAAGTTCATATTTACATAATGAAGTAAAAAATAATTCAAAATTTCAGTATCTTTGAGTATCTAAGTATAAATACTAATA
AAAACAAAGAAGGATTGATTTGCAGCAAAAGATGTCTTTCACATACAACTAGAAAATGCAGTGGAAGAGGTCGTTGTTAGTGATGAACCCTGCTTTTCCG
CCACATTGCTCCTGTTATTGCAGTGGGAGGGATTGTAAATCTTGTTCACAATTACTAGTGTCAAACAAATAGACATACAGTGAATGACTTTATCTAAATA
TCTAAAAGGTCAACACCAAATGAATACACAGTCAACATATGTGTGTCTGGAGCTTCAGTTTGAACATGGAGAGATCGCCAAAATATCTAATGAACAATCG
ACCATCCTACTACGAATTTAGGCACTAGATTTAGGGATTACATTTCCCCTTTGATTGTACTATCTACCACAACTACAATTATCCACACTAACGAAATTCT
AAAAGTTACCCCTTTGATTGTCATATCACACTGCTGCTAGTCTCGCACAACCGTAAAAGATATCGAAAACAATTAATAGATAATTTTGCATCTGTCTACA
ATTCCCATATTCCCATATCCGTATCTCCATACCGTGTAACATAGGTTTGCGGTGAACAGGTTGGATTGGAAGCAAGCAAAGAATGTGCACTATGGTTTGA
ATAGTCTGGGAGCATCAACAGCTCTAACAGGAATTTGGCTCAGCTTCAAGATCATTCAACCACCAAAGGCATTGCCTGGTGACATCGCATGGCCATACGT
CAGCTTATAAAGGCCAGTTCTTTTGTTGCCTTTTTGAGCTTCTAGAATAAGTTGCCCCGGATCCAACTTATTTTGGAAGCCCAACCAAAAATATTTATTT
AGAAGCCTATTAGTCAAGTCTTAATTAGTAGACTTCTAAAGAAAGAAATTTGATTGAAGCTTCTAGAATAAGTTGGGTAGGGGGTGTTAGGTTGATTTCT
TCCCGAGTGGGCCCAACGGCCCATCGGACCATGATCCACGCGCCCTGATCGGGAATGTCCAACCCGTTATGGTTGGTGGGCCCCTGTGACCCGTGCTATA
TAAACAGAGGTGGGGGCCGGGACACGACTTACGAGGTTCGCCGTTGCCACACACCCCACCTAAAAACCCATCCGATGTAGAGTTAGCGCGGTGTTCACAG
GAAGCTCCACCGACGCCACACCCTTCTCTGTCACCACCACCGTCGCCACTACACCGATGGAGGCCAGCGGGAGGTCATCAAGTTCTGGAGAAGGTAAACT
CCACCCTAATACCGAATGATTTTAGCCCAGTCGATCTAGTAGATCAAACAATGGTATCGGAGGCACTCGGTTTTAATAGCTTTTTCGGTAGAAAGGAAAA
TAACCGAGAAAGATCCCTCCCCACGACGAACCCTAGCAGGGCAAAGTACAATCCAAAGAAACAGAAAGATCACCAGAGAAGGGCCTTGGGCCCGCCGGTA
AAGTAGTGCCGCCGCAAGGCCACGCCTGTTCCTCTCGATCCCCACACGCATCAGCAAGCTGAGGGGTGGGGAAGAACAACACCACCCCTTCGGGGGCAAA
GCAAAGATCGGATTGGATCCGAAAGCTAACAAAAAAGGGAAAGAAAATGCAAAGAAACCACTCCAACCGGGGCAAAGGGCACCACCACCGCGACCTTGAC
GGTGGCGTGTTCACCTTGGAGGTGCTCATCGCGCGCCGGCAAAGGAACGGAGATGGCGCCGCCGCTGCGGATCTTCTCTGCACGGAAAAGAACAAAGGGG
CAAAAGGGCCCCCTTGACGGCGGCGCACTCTCCCTCAGGAGCTCGCGCGCACCAGCAAGAGGGGCGGAGGAGGCGCCGCTGCATCCCGTCTCCCTATCTC
TATCTGTGTGAGAGTGGAGGAAAGAAGAGGCTAACGGGGGAAAGGGAGAGGGCTCGCGGTGGCTCGGCTGTGCTCACTGTCGGCCGGCCGCTGCTGCCTC
GGGCGACGGGAAGGGGAGGGAGAAGAAGGACACACGTGGCGCGGTGGCCGGCGTGCCTCCTCCCCGCCACCGTTTCCGTTGCCGGGGGGAGCAGAGGGGG
GCCGAGAGGCTTGCGCGGGAGGGAGAAGCCAGGGGCGCGCGAGAGAACCAGTGGCCCCTGCCCTCAAGCTGCTTGAGGACGAGCACAACAGCATGCTCGG
GAGAGGAGAAGTGAGCAGCACTGGGGAAAATGAAACTAGGGTTTCAGCCCGTGGTGGCTGTGGCAGGTTTTTGTTGCAAGAGAAATCGACGGGCGACCGT
TGGATTGTATTGAACGGCCCCGATCGGCCAGGAGGGGAAACCCTAGCCCAGCCGGGCCGTTTGGGCCACAACTAGCTGGCCAAAGGATGACGGGAGCAAG
GGCCAGCCAGGCCGAAGTGGGCCAAAAGGAGGCACGCGAAACTGTAGTTGCGGGTGTGCAGCTGCGCGAGGGCAGGTCGACCAAAAGGGCCACTCGGCCG
GTTTAGGCCAATCTTTTTTTATTAAAAAGTTTCTGTCTTTTTTTTGTTCAGTTTCTTTCGACATTTTT