Detailed information on CNT30224296


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187858Hordeum vulgareSecale cereale91.775.7688475forward
CNT30393271Hordeum vulgareTriticum turgidum96.1482.4589.56498forward
CNT30684663Hordeum vulgareTriticum urartu44.7947.6487.93232forward
CNT30721717Hordeum vulgareTriticum spelta87.8484.7387.91455forward

Expression of CNT30224296

Peptides detected in this lncRNA

>peptide 1 (58 aa)
PIRAVHPLGFSPPHHPIPISTRREPPPPTIYGDRVRPHTSAAVSAAANRRARPTPTPR*

>peptide 2 (83 aa)
ADPSRPPARVFPSPSPHPYKYEARAAAANNLRRSGSSTHLRRRLRRCEPESEADSDAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30224296
GCCGATCCGAGCCGTCCACCCGCTAGGGTTTTCCCCTCCCCATCACCCCATCCCTATAAGTACGAGGCGAGAGCCGCCGCCGCCAACAATCTACGGAGAT
CGGGTTCGTCCACACACCTCCGCCGCCGTCTCCGCCGCTGCGAACCGGAGAGCGAGGCCGACTCCGACGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAG
GATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCGCCTTGGAGGATGGAGGCGTAGCATCATCTTACATCCAGGCATCGA
AACACCGAGGGATGATGGCATAGGCTTGTGATTCCTGATGTGTTCTGCCGCTGTGGTTGTGGAAGTCGTTTTACCTTTGTCTTGTCAAATTTAGCTGTTT
AATACTTGTCTGGTTATGTTCCAGGACTGAGTTTTATGTAATGTGAGGATTATATGTGTTTATGACTGAATTTTATGCACCTATTATCTTTAAGCTACTC
TGAATAGTTACTTTTGAC