« Back to Populus trichocarpa search


Detailed information on CNT3022423


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316771Populus trichocarpaCorylus avellana18.5841.782.2191forward
CNT30517065Populus trichocarpaJuglans regia11.5841.0381.51119forward
CNT3070514Populus trichocarpaQuercus suber17.774.5980.77182forward
CNT30566887Populus trichocarpaActinidia chinensis14.985081.17154forward
CNT30570768Populus trichocarpaVitis vinifera19.3640.0483.42199forward

Expression of CNT3022423

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MQGQYPIVALSESSYERDHCKMSMHIISMTVSSVLCLIYNYSGFMLKF*

>peptide 2 (50 aa)
MLVIKINGFKLKAFQAGLTSSSHIIRIPSNLKTAVLKAGAKFGGQFNSLS*

>peptide 3 (31 aa)
MPMHPSPCADTSRPCDPSLILFTVAISLVLI*

Sequence

>CNT3022423
AATCTCTTCCTCCACATCTCTTGACCACAGTGACCACTCCAACTGCACGGCTGTTATCGGATGAACAGCGTGAGCTCTTCTGATTGTTGAAGCAGAGGCC
TCAGACAGACCTATATACTTTATTTTACCTTCTTCAACTAGTTTCTTGAGTTCCCCCATCTAGCAAAGAAAAGAATTATGAGTGCACAACTGCAAGACAT
TTTTCAGCTAGAATGCAGGGACAGTACCCAATAGTAGCATTGTCAGAATCCAGCTACGAAAGAGACCATTGCAAGATGTCAATGCACATAATAAGCATGA
CGGTATCATCAGTACTGTGTCTAATCTATAATTATAGTGGGTTTATGCTGAAGTTTTAGGATTTTTGGATATTCCTGTGACAGATTCTGGAAAATATATC
ATCAAGTAAAAGAAAATTCTCTAACTATCATCATAGCCATCGAACGATCAAGATTAATCAGAACAATATTCAGAAATAAAAACAATTAAAGAGAAATACC
GTAGCTTCAATAGGAACGCTGGTATCAATGCGATGTTGGTAATAAAGATCAATGGATTCAAGTTGAAGGCGTTTCAAGCTGGCCTCACAAGCAGCTCTCA
CATAATCAGGATCCCCTCGAACCTCAAAACTGCCGTCCTTAAAGCTGGCGCCAAATTTGGTGGCCAATTCAACTCTCTGTCGTAATCCTCCCGCCTTCAA
GGCCTTGCCCAGAAGGATTTCGTTGGTGTGGGGTCCATAGACATCAGAGGTGTCGAGTGAAGTGACCCCGGTGTTGACGGCATGGTGGATGAGGGCGATC
ATGTCTTATTCAGGCTTTGGAGGGCCGTAGGCGGCAGACATGCCCATGCATCCAAGTCCCTGTGCTGATACTTCAAGACCCTGTGACCCCAGCTTGATCC
TTTTCACTGTTGCCATCTCTCTTGTTCTTATTTAATTTGCTTCTCAAGAATGACGGACTCAGTGTGTGTACGAGTTCTCGGCTCAGCCTAGCAAATAAAA
CAAAACAGCCATAAATAGAGGAAGTGAA