Detailed information on CNT30224163


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001703, E-value = 6e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692364Hordeum vulgareOryza sativa63.7938.0191.59428forward
CNT30503993Hordeum vulgareNicotiana attenuata28.4669.4586.91191forward
CNT30296842Hordeum vulgareTriticum aestivum37.2635.8792.8250forward
CNT30127375Hordeum vulgareCorymbia citriodora41.7350.1888.21280forward
CNT30721809Hordeum vulgareTriticum spelta69.330.8295.27465forward
CNT30116376Hordeum vulgareOryza nivara36.8145.4987.85247forward
CNT30594443Hordeum vulgareEragrostis curvula60.6635.0690.17407forward

Expression of CNT30224163

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMMTWEVKLAASLAGSSLELDATNPRFRSF

>peptide 2 (54 aa)
MTANKILQLDSAYFFLMAALVTLAPVGSFFSTPLMTPTATVCLMSRTAKRPRGG*

>peptide 3 (53 aa)
MGLVGIIFTIPASPFLRNLGSASSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

Sequence

>CNT30224163
TCTGTAAATAAAAAACAGATAGACAGAAACATGCAACCATTTGGCAAAAGCAGCAGAAAAACAAGTGCAATCTAATAACTTGCATTTCACAACAAATCAG
TCTCAGGGCACAGGAGTTTAGCAGAAGCAGGAATAGAAATACAGTAATTAAACGACAGACAGATCATTGCTCGCCCGGGATAAGAGTCTGAAGCAACAAA
AGCAATGACCGCGAACAAAATCCTTCAGCTAGATAGCGCCTATTTCTTCTTGATGGCAGCCTTGGTAACCTTGGCACCGGTGGGGTCCTTCTTCTCCACG
CCCTTGATGACACCGACAGCAACCGTTTGTCTCATGTCACGCACGGCAAAACGGCCAAGAGGAGGGTAGGTGGCAAAGGTCTCCACAACCATGGGCTTGG
TGGGAATCATCTTCACGATACCAGCATCACCGTTCTTGAGGAACTTGGGCAGCGCCTCCAGCTCCTTACCAGATCGCCTGTCGATCTTGGTCACCAGCTC
AGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCATAGCCATTGCCGATCTGACCAGGGGTGGTTCATGATGATGACCTGGGAGGT
GAAGTTGGCTGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGATGCAACAAACCCACGCTTCAGATCCTTCA