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Detailed information on CNT3022395


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 2e-89

BLAST vs NONCODE:
NONBNAT003701, E-value = 2e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516669Populus trichocarpaJuglans regia71.2931.6487.37293forward
CNT30373064Populus trichocarpaArabidopsis thaliana60.8343.7880250forward
CNT30501026Populus trichocarpaCoffea canephora51.8213.9587.32213forward
CNT30282683Populus trichocarpaChenopodium quinoa77.3734.5385.53318forward
CNT3021503Populus trichocarpaCitrullus lanatus71.7875.4586.1295forward
CNT3070085Populus trichocarpaQuercus suber63.2639.8883.85260forward
CNT30381388Populus trichocarpaManihot esculenta66.9147.1778.91275forward
CNT30708912Populus trichocarpaGlycine max52.824.9186.18217forward
CNT3046375Populus trichocarpaPrunus dulcis80.0547.1386.63329forward
CNT30638211Populus trichocarpaCapsicum annuum28.2220.7988.79116forward
CNT3098188Populus trichocarpaSolanum tuberosum49.6441.1382.84204forward
CNT30305192Populus trichocarpaTriticum aestivum32.8524.9182.96135forward
CNT30567580Populus trichocarpaActinidia chinensis43.5535.889.39179forward
CNT3085325Populus trichocarpaVigna radiata80.2946.6883.33330forward
CNT30542456Populus trichocarpaBrassica napus60.5857.6481.53249forward
CNT30238041Populus trichocarpaBrassica oleracea54.7429.6180.89225forward
CNT30668803Populus trichocarpaTriticum dicoccoides68.3736.5481.14281forward
CNT30313019Populus trichocarpaCamelina sativa61.5641.3484.19253forward
CNT3080335Populus trichocarpaBrassica juncea52.3137.9281.86215forward
CNT30263082Populus trichocarpaBrassica rapa69.5985.3787.76286forward
CNT30475173Populus trichocarpaSaccharum spontaneum56.9331.4985.47234forward
CNT30715065Populus trichocarpaMalus domestica golden77.8622.587.5320forward
CNT30624536Populus trichocarpaDaucus carota74.2121.7186.56305forward
CNT30478285Populus trichocarpaArabidopsis halleri35.7742.4985.03147forward
CNT30370393Populus trichocarpaOryza glumipatula29.4451.4985.12121forward
CNT30154268Populus trichocarpaPrunus persica39.934.4589.02164forward
CNT30570453Populus trichocarpaVitis vinifera60.5856.7280.32249forward
CNT30704833Populus trichocarpaPrunus avium80.0546.0884.5329forward
CNT3038372Populus trichocarpaCucumis melo69.125.8284.15284forward
CNT30576697Populus trichocarpaOryza barthii27.4926.0485.84113forward
CNT3050211Populus trichocarpaCucumis sativus73.4880.3282.78302forward

Expression of CNT3022395

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MFLFKTKRPTGCRGKISSGQVLVTSSGSKSNLASWSGSIVWMKSFQ*

>peptide 2 (38 aa)
MVRINCLDEKFPMKFHIMGFSSLVDQHVGVNTRAFHMSI

>peptide 3 (36 aa)
VIVMMSTLGSISRELQIVWSKTVPLGISIGEDSSLE*

Sequence

>CNT3022395
GTGATTGTTATGATGAGCACACTTGGGAGCATTAGCAGGGAGCTGCAGATAGTTTGGTCCAAGACGGTGCCTCTGGGTATCAGCATAGGAGAAGATTCGA
GTCTGGAGTAGCTTGTCATCTGAATAGTAAACACCAGGAACCACAATAGCAGGGCAGAAAGCAAGCTGCTCATTTTCAGCAAAGAAGTTGTCGATGTTCT
TATTCAAGACCAAGCGACCAACTGGCTGCAGGGGCAAGATATCCTCAGGCCAGGTCTTGGTTACATCAAGTGGGTCAAAATCAAACCTGGCTTCATGGTC
AGGATCAATTGTCTGGATGAAAAGTTTCCAATGAAATTTCACATAATGGGCTTTTCCAGCCTTGTTGATCAACATGTAGGTGTTAACACCAGAGCCTTCC
ATATGTCTATA